Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29870 223 / 2e-75 Oligosaccharyltransferase complex/magnesium transporter family protein (.1) AT2G19340 208 / 1e-69 Oligosaccharyltransferase complex/magnesium transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003228 [exp] 267 / 9e-93 AT4G29870 283 / 3e-99 Oligosaccharyltransferase complex/magnesium transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G139600 [exp] 209 / 1e-69 AT4G29870 225 / 3e-76 Oligosaccharyltransferase complex/magnesium transporter family protein (.1) Potri.006G072600 [exp] 191 / 2e-62 AT4G29870 189 / 3e-62 Oligosaccharyltransferase complex/magnesium transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF04756 [flax] [poplar] OST3_OST6 OST3 / OST6 family, transporter family
Representative CDS sequence Show only first row Show all	>Lus10035623 pacid=23147533 polypeptide=Lus10035623 locus=Lus10035623.g ID=Lus10035623.BGIv1.0 annot-version=v1.0 ATGGCTCCCAAATTGGATCCCCAAGCTCTTCAATCGGAGCCCGCAAATGGATCAATCGATCCACTATTCCACCTCCTCAGAGTCGTTCCTTACTCCGTCA TCCTCCGCCCTCCCCGCCTCCGTCTCAAGCTTCCATCCCTCACCCTCCCTTCTCCGATGACGGTTTTCTCCCTGGTTCTGCTGACCTACTTCATGGTCAT CTCCGGTTTCGTCTACGATGTCATCGTCGAGCCTCCCGGTATCGGATCCGTCCAGGATCCCGTCACCGGCTCCGTACGACCCGTCGTGTTCATGTCCGGC CGAGTGAACGGCCAGTACATCATCGAAGGCCTGTCGTCGGGATTCATGTTTGTTCTCGGTGGGATCGGGATCATTCTGTTGGATCTTGCCCTTGACAAGA ATCGCGCGAAGAGTGTCAAGGTTTCATATGCCTCTGCTGGGGTCACCTCCATTGTGCTTGCCTACGTGATGAGTATGCTGTTTATTCGCATTAAGATCCC CGGTTATTTAAGATGA
AA sequence Show only first row Show all	>Lus10035623 pacid=23147533 polypeptide=Lus10035623 locus=Lus10035623.g ID=Lus10035623.BGIv1.0 annot-version=v1.0 MAPKLDPQALQSEPANGSIDPLFHLLRVVPYSVILRPPRLRLKLPSLTLPSPMTVFSLVLLTYFMVISGFVYDVIVEPPGIGSVQDPVTGSVRPVVFMSG RVNGQYIIEGLSSGFMFVLGGIGIILLDLALDKNRAKSVKVSYASAGVTSIVLAYVMSMLFIRIKIPGYLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	0	1
AT1G19480			DNA glycosylase superfamily pr...		Lus10010824 [exp]	1.4	0.9555
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	1.4	0.9616
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10040418 [exp]	1.7	0.9478
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Lus10029924 [exp]	2.4	0.9324
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10023533 [exp]	2.8	0.9400
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10009842 [exp]	3.9	0.9331
AT3G12650			unknown protein		Lus10037700 [exp]	4.5	0.9230
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10037129 [exp]	5.0	0.9068
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10017397 [exp]	5.7	0.9159
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10029770 [exp]	6.0	0.9219

Compare expression of checked genes

Lus10035623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.