Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43590 245 / 2e-80 Chitinase family protein (.1) AT3G54420 241 / 5e-79 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43610 226 / 6e-73 Chitinase family protein (.1) AT2G43580 223 / 5e-72 Chitinase family protein (.1) AT2G43620 213 / 9e-68 Chitinase family protein (.1) AT2G43570 202 / 1e-63 CHI "chitinase, putative", chitinase, putative (.1) AT3G47540 172 / 8e-53 Chitinase family protein (.1.2) AT4G01700 162 / 6e-48 Chitinase family protein (.1) AT1G56680 160 / 2e-47 Chitinase family protein (.1) AT1G02360 159 / 6e-47 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003227 [exp] 499 / 1e-179 AT2G43590 241 / 7e-79 Chitinase family protein (.1) Lus10003226 [exp] 342 / 2e-117 AT3G54420 269 / 2e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035625 [exp] 319 / 5e-109 AT3G54420 266 / 7e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10024368 [exp] 304 / 4e-104 AT2G43590 264 / 2e-89 Chitinase family protein (.1) Lus10010861 [exp] 304 / 5e-104 AT2G43590 263 / 6e-89 Chitinase family protein (.1) Lus10010862 [exp] 302 / 2e-103 AT2G43590 262 / 1e-88 Chitinase family protein (.1) Lus10032794 [exp] 299 / 3e-102 AT2G43590 265 / 6e-90 Chitinase family protein (.1) Lus10003587 [exp] 295 / 9e-101 AT2G43590 270 / 1e-91 Chitinase family protein (.1) Lus10035621 [exp] 287 / 6e-95 AT3G54420 243 / 2e-78 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093900 [exp] 276 / 1e-92 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 272 / 7e-91 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 268 / 2e-89 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 264 / 1e-87 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093800 [exp] 260 / 4e-86 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125000 [exp] 238 / 1e-77 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 230 / 1e-74 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.002G186500 [exp] 172 / 8e-52 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.014G111800 [exp] 172 / 1e-51 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.004G182000 [exp] 153 / 5e-44 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10035624 pacid=23147657 polypeptide=Lus10035624 locus=Lus10035624.g ID=Lus10035624.BGIv1.0 annot-version=v1.0 ATGGCCAAGCTTCCACATGCAGCCTTCTTCCTTCTCCTCATAGCCGTTCCTTTTGGACTAGCCGCGGCTAGAGTTGTGACGACCATCGAGGTCGTCGACT CATCTCCTTGCCGAGACCAACTCGATCAGCAGAGTACAGATCTCGATCAATTCGATGCAGATTTCGATCAGGACTCCCTCGAAGAAATCAATTCGAACGA ACAACAGTACAACTATGATGATGATGAAACCTCGGTTGACGGAAGGTACATAGTAATGCCAACTGAGGATGAGCAGGAATCTGATTCGTCATTGCTGATA GAGGATGATGATGAAGATGATTCGGTGTCCGAAGAGGAGGGAAAATTGGGTATTAATGTGGGAAGCGTAGTGACACCGGCTTTCTTCAACAGCATTATAA GCCGGGCGGATCCAAGCTGCAAAGGGAAGCGATTCTACACCAGGGGCGCATTCCTCAACGCCACCAAATCATACCGCAAGTTTGGAAACCTCTCCAGAAC TGCTGCTAAACGTGAAATTGCTGCCTTTTTCGCCCACGTCACTCATGAAACTGGACATTTGTGCTATATTGAGGAGATTCAGAAGTCAACGTACTGCGAC CGGAGGTCGGAGAGACAGTGGCCGTGCGCTCCGGGGAAGCAATACTTCGGGAGGGGCCCACTTCAGATTACGTGGAACTACAACTACGGCCCGTGCGGGA AAGCCAACAGGTTTGACGGCTTGAAGAACCCTGACATCGTGGCTAAGAATCGCGTCATCGCGTGGAAGACAGCGCTCTGGTTCTGGATGAAGAATGTTCG TCGTGTTCTGCCCCGCGGGTTCGGTGCCACGATTCGGGCCATAAATGGCGGGGAGTGCAACGGCGGAAGACCTGCCGCCGTCGCTGCTCGGGTTAAGTAC TACAAGAGCTACTGCAAGCGCTTCAATGTAACCACGGGACCTAACGTCAGCTGTTAG
AA sequence Show only first row Show all	>Lus10035624 pacid=23147657 polypeptide=Lus10035624 locus=Lus10035624.g ID=Lus10035624.BGIv1.0 annot-version=v1.0 MAKLPHAAFFLLLIAVPFGLAAARVVTTIEVVDSSPCRDQLDQQSTDLDQFDADFDQDSLEEINSNEQQYNYDDDETSVDGRYIVMPTEDEQESDSSLLI EDDDEDDSVSEEEGKLGINVGSVVTPAFFNSIISRADPSCKGKRFYTRGAFLNATKSYRKFGNLSRTAAKREIAAFFAHVTHETGHLCYIEEIQKSTYCD RRSERQWPCAPGKQYFGRGPLQITWNYNYGPCGKANRFDGLKNPDIVAKNRVIAWKTALWFWMKNVRRVLPRGFGATIRAINGGECNGGRPAAVAARVKY YKSYCKRFNVTTGPNVSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43590			Chitinase family protein (.1)		Lus10035624 [exp]	0	1
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020480 [exp]	1.0	0.9802
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10007034 [exp]	2.4	0.9346
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10040328 [exp]	8.5	0.9235
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020481 [exp]	9.2	0.9125
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10003226 [exp]	10.6	0.9115
AT5G18840			Major facilitator superfamily ...		Lus10033995 [exp]	10.7	0.9322
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10032096 [exp]	11.0	0.9181
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006557 [exp]	11.6	0.9137
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006690 [exp]	15.8	0.9040
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039559 [exp]	16.1	0.9168

Compare expression of checked genes

Lus10035624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.