Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54420 266 / 1e-88 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43590 249 / 2e-82 Chitinase family protein (.1) AT2G43580 229 / 2e-74 Chitinase family protein (.1) AT2G43620 209 / 3e-66 Chitinase family protein (.1) AT2G43610 208 / 4e-66 Chitinase family protein (.1) AT3G47540 185 / 6e-58 Chitinase family protein (.1.2) AT2G43570 183 / 4e-56 CHI "chitinase, putative", chitinase, putative (.1) AT1G02360 169 / 7e-51 Chitinase family protein (.1) AT4G01700 167 / 4e-50 Chitinase family protein (.1) AT1G56680 163 / 2e-48 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003226 [exp] 460 / 2e-164 AT3G54420 269 / 2e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035624 [exp] 326 / 1e-111 AT2G43590 246 / 5e-81 Chitinase family protein (.1) Lus10003227 [exp] 319 / 6e-109 AT2G43590 241 / 7e-79 Chitinase family protein (.1) Lus10035621 [exp] 288 / 2e-95 AT3G54420 243 / 2e-78 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10024368 [exp] 270 / 5e-91 AT2G43590 264 / 2e-89 Chitinase family protein (.1) Lus10010861 [exp] 270 / 6e-91 AT2G43590 263 / 6e-89 Chitinase family protein (.1) Lus10010862 [exp] 269 / 2e-90 AT2G43590 262 / 1e-88 Chitinase family protein (.1) Lus10003231 [exp] 268 / 3e-90 AT3G54420 241 / 2e-80 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10032794 [exp] 265 / 5e-89 AT2G43590 265 / 6e-90 Chitinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093900 [exp] 275 / 2e-92 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 273 / 1e-91 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 268 / 1e-89 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093800 [exp] 268 / 2e-89 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 262 / 4e-87 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125000 [exp] 261 / 5e-87 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 247 / 2e-81 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.014G111800 [exp] 175 / 3e-53 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.002G186500 [exp] 174 / 1e-52 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.009G141700 [exp] 146 / 1e-41 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10035625 pacid=23147493 polypeptide=Lus10035625 locus=Lus10035625.g ID=Lus10035625.BGIv1.0 annot-version=v1.0 ATGGCAAAGCACTCACATGTAGCCTTCTTCCTTCTTCTCCTAGCCATTCATCTGGCTCTAGCCTCGGCTGATGTTGTAACCACTGTCGAGGTCGATTCCT CTCTTTGCCACGACAAAATCAATCAGGGCACTACTGATGATCAACTCAGTACTACTTTCGAAGAGCAGGAGAAAACTGATCAGCTCAACAGAGATCTCGA CGCAATTGATGAGGCCACTGAACGATTTTACGCAGATTTGGACGATGAGGCCACCTCCACATCGGTTGAGGACCAAGGTTACATAGTCATGCCAACTGAT AAAGTTGGTGCCATAGTGGGGCTTGTAGTAACACCGTCATTTTTCAACAGCATTATCGGCAAGGCGGCTCCTAGCTGTGCCGGGAAGAGGTTCTACACTA GACAGTCATTCCTCAACGCTGTCAGATTTTATAACAAGTTCGGCCAGCTCAATGGCGATAACGGCAAGCGCGAAATAGCTGCGTTTTTCGCCCATGTCAC TCATGAAACTGGAAGTTTGTGCTATACCGAGGAAATCAATAAATCGCCATACTGCGACCAGAATGCGAAGCAATGGCCATGTGCTCGGGGGAAGCAATAC TTTGGTCGGGGACCTCTCCAGCTGACGTGGAACTACAACTATGGGCCGTGCGGAAGAGCCAACGGGTTTGACGGTTTGAACAACCCTGAGATCGTGTCGA GGAACCCTGAGATCGCGTGGAGGGCGTCGCTCTGGTTCTGGATGAATAGTGTTCGCCCCGTTGTTGGCCAAGGTTTCGGGGCCACCATCAGGGCCATTAA CGGCGCCTTGGAGTGCAATGGAAAGAACCCTGCCGCGGTTAATGCTCGCGTTAAGTACTACGCGGACTATTGCAGACAGTTCAAGGTATCCGCAGGACCT AATCTCAGATGTTAA
AA sequence Show only first row Show all	>Lus10035625 pacid=23147493 polypeptide=Lus10035625 locus=Lus10035625.g ID=Lus10035625.BGIv1.0 annot-version=v1.0 MAKHSHVAFFLLLLAIHLALASADVVTTVEVDSSLCHDKINQGTTDDQLSTTFEEQEKTDQLNRDLDAIDEATERFYADLDDEATSTSVEDQGYIVMPTD KVGAIVGLVVTPSFFNSIIGKAAPSCAGKRFYTRQSFLNAVRFYNKFGQLNGDNGKREIAAFFAHVTHETGSLCYTEEINKSPYCDQNAKQWPCARGKQY FGRGPLQLTWNYNYGPCGRANGFDGLNNPEIVSRNPEIAWRASLWFWMNSVRPVVGQGFGATIRAINGALECNGKNPAAVNARVKYYADYCRQFKVSAGP NLRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10035625 [exp]	0	1
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10007102 [exp]	1.7	0.8815
AT1G72940			Toll-Interleukin-Resistance (T...		Lus10041605 [exp]	2.0	0.8595
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10036959 [exp]	3.9	0.8263
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10019030 [exp]	6.0	0.8196
AT1G15170			MATE efflux family protein (.1...		Lus10002200 [exp]	6.6	0.7494
AT5G42340		PUB15	Plant U-Box 15 (.1)		Lus10012260 [exp]	7.9	0.7517
					Lus10012672 [exp]	14.4	0.7841
AT2G25270			unknown protein		Lus10014341 [exp]	17.0	0.7731
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10035881 [exp]	18.5	0.7749
					Lus10010582 [exp]	19.4	0.7595

Compare expression of checked genes

Lus10035625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.