Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53810 680 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 676 / 0 RLK receptor lectin kinase (.1) AT4G02420 656 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 627 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 605 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 568 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 567 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 535 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 530 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60280 528 / 0 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003224 [exp] 1142 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 985 / 0 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 981 / 0 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 612 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 608 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 606 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 597 / 0 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 595 / 0 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 594 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G088680 [exp] 796 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 792 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 773 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 768 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 767 / 0 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.006G088648 [exp] 732 / 0 AT2G37710 710 / 0.0 receptor lectin kinase (.1) Potri.006G088801 [exp] 686 / 0 AT3G53810 662 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 607 / 0 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G196600 [exp] 602 / 0 AT4G29050 663 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 601 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10035627 pacid=23147664 polypeptide=Lus10035627 locus=Lus10035627.g ID=Lus10035627.BGIv1.0 annot-version=v1.0 ATGGCCATGTTCCCAAAACTCGCCGTCTTCTTCTTCTTGCTAGTTACTTCAGTATTATCCTCGAACGACGTCGGTTTCACATACAACCGCTTCCCGGCGG CGAACCTCGTACTCGACGGCATAGCAGAGTACACTTCCGACAACCTCCTCAGGCTCACCAACGACACATTGCAGCAGGAAGGCCACGCCTATTATCCAGA CCCGGTATCGTTCAAGAACGGTCCAAACGGTACCGTTTCGTCCTTCTCGACTTCCTTCGTCGTTGCAATTATACCTCAGTACTCGAATCTCGGAGGCCAT GGGATCGCCTTCGTGATCTCCCCCAACAGAGGCCTCCCCAATTCGCTGCCGAGCCAATACCTCGGCCTGTTCAACGAGTCCAACATCGGGAATTTCAGCA ACCACGTGTTCGCCGTCGAGCTGGACACGATTTACAGCAGCGAGTTTGATGACATCGATAACAATCATGTCGGGATTGATATCAACGGGCTGGATTCCAA GTCGGCAGCTCCAGCTGGGTACCATGATGATTCTGATGGCAAGTTTTTGAATTTGACTTTTATTTCTGGCAAGCCAATTCAGGTTTGGGTTGACTACGAC GGCGGAGGGAAGAGAATTAACGTTACTTTGGCTTCGGTCAACGCCGCAAAACCAAAGAAACCGTTGATTTCATTTCCACAAGACCTGTCAGAAGTTTTGC AGGATGAGATGTTCATCGGGTTCTCGTCGTCTACAGGATCGTTCCTGACGCATCATTATGTATTGGGGTGGAGCTTTAAGATGAACGGTCAAGCTGAAGA TTTAACCATCTCTCCACTTCCCAAGCTTCCGAGGAGGATCGGAGAACGAAAAGAAAGGAGGAAGAGGAAATTTGCAGAAGTGTTGGAAGATTGGGAGGTT CACTACGGTCCGCACAGGTTCAAGTTCAAGGATTTGTACGTTGCCACGAAAGGGTTTCGGGCAAAGGAGGAATTGGGGCGGGGTGGATTCGGGACAGTTT ACAAGGGAATCCTGAGGAAGACGAATAACGAGATAGCTGTGAAGAGGGTGTCTCATGATTCCAGGCAAGGGATGAGGGAATTCGTGGCGGAAATTGTTAG CATCGGCCGACTTCGTCACCGTAATTTGGTGAGTTTGTTGGGTTATTGTCGGAGGAAGGGGGAGTTGTTGTTGGTTTACGATTTCATGCCCAATAGCAGT TTGGACAAGTATCTTTATGGTGATCAGGATACATTGATTCTGAAATGGTGCCTCAGGTTCAAAGTTCTGAAGGGAGTGGCTTCAGGGTTGTTCTACCTGC ACGAGGAATGGGAACAAGTCGTGATTCACCGAGATGTGAAGGCAAGCAATGTTATGATAGATAGCGAATGGAACGGGAGGTTGGGCGATTTCGGCCTAGC GAGGCTATACGATCACGGGTCGGATCCTCGAACAACGCATGTAGCTGGCACTCCTGGGTACCTCGCACCCGAACATGCCCGTACGGGAAAGGCCACGACC AGTAGCGATGCTTACGCTTTCGGTGCATTTCTGCTAGAGGTGGCGTGCGGGAGGAGGCCAATCGACCCAGAGAAGCCAGCTGGTCAGGTGATTTTGGTGG ATTGGGTGTTTTCATGTTGGCTCGGTGGTGACATTTTAGAAGCTACGGATCCGAACTTGGGTGAAGAGTTTGTGGCCGAGGAAGTGGAGTTGGTTTTGAA ACTCGGGTTGTTGTGTTCTCATTCGGATCCCGAAGCTCGGCCGAGTATGCGACAGGTTCATCAGATGTTGGGAGGCGAATTGCCTTTGCCTGATATGTCG TCTATGGGACTTTCCATTTCCTCGACCGGGCTTAACTTTGCTCGTCGTGAGCGCCTCATGGAATTGGCTATGTCTTCAGGTTCTTCGTCGGCGTCATTCA ATCATCTGTCTTCTGCGGAAGAGTCACTTGTATATGGTGGTCGTTAA
AA sequence Show only first row Show all	>Lus10035627 pacid=23147664 polypeptide=Lus10035627 locus=Lus10035627.g ID=Lus10035627.BGIv1.0 annot-version=v1.0 MAMFPKLAVFFFLLVTSVLSSNDVGFTYNRFPAANLVLDGIAEYTSDNLLRLTNDTLQQEGHAYYPDPVSFKNGPNGTVSSFSTSFVVAIIPQYSNLGGH GIAFVISPNRGLPNSLPSQYLGLFNESNIGNFSNHVFAVELDTIYSSEFDDIDNNHVGIDINGLDSKSAAPAGYHDDSDGKFLNLTFISGKPIQVWVDYD GGGKRINVTLASVNAAKPKKPLISFPQDLSEVLQDEMFIGFSSSTGSFLTHHYVLGWSFKMNGQAEDLTISPLPKLPRRIGERKERRKRKFAEVLEDWEV HYGPHRFKFKDLYVATKGFRAKEELGRGGFGTVYKGILRKTNNEIAVKRVSHDSRQGMREFVAEIVSIGRLRHRNLVSLLGYCRRKGELLLVYDFMPNSS LDKYLYGDQDTLILKWCLRFKVLKGVASGLFYLHEEWEQVVIHRDVKASNVMIDSEWNGRLGDFGLARLYDHGSDPRTTHVAGTPGYLAPEHARTGKATT SSDAYAFGAFLLEVACGRRPIDPEKPAGQVILVDWVFSCWLGGDILEATDPNLGEEFVAEEVELVLKLGLLCSHSDPEARPSMRQVHQMLGGELPLPDMS SMGLSISSTGLNFARRERLMELAMSSGSSSASFNHLSSAEESLVYGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10035627 [exp]	0	1
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	1.4	0.8415
AT5G63380			AMP-dependent synthetase and l...		Lus10022335 [exp]	1.7	0.8228
AT1G55170			unknown protein		Lus10037647 [exp]	2.0	0.8369
					Lus10016767 [exp]	6.6	0.8180
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	8.9	0.7877
AT2G30990			Protein of unknown function (D...		Lus10033602 [exp]	13.6	0.8089
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10019444 [exp]	20.7	0.7596
AT2G03240			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026622 [exp]	26.2	0.7895
AT5G17680			disease resistance protein (TI...		Lus10003749 [exp]	33.4	0.8129
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10008083 [exp]	34.5	0.8000

Compare expression of checked genes

Lus10035627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.