Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02170 271 / 2e-88 AtMCP1b, ATMC1, LOL3, ATMCPB1, MCP1B, AMC1 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) AT5G64240 248 / 2e-80 AtMCP1a, ATMC3 metacaspase 1a, metacaspase 3 (.1.2) AT4G25110 237 / 8e-75 AtMCP1c, ATMC2 metacaspase 1c, metacaspase 2 (.1.2) AT1G79340 98 / 2e-22 AtMCP2d, ATMC4 metacaspase 2d, metacaspase 4 (.1) AT1G79330 92 / 2e-20 ATMC5, AMC6, ATMCP2B metacaspase 2b, metacaspase 5 (.1) AT1G79320 91 / 2e-20 AtMCP2c, ATMC6 metacaspase 2c, metacaspase 6 (.1) AT1G79310 87 / 1e-18 AtMCP2a, ATMC7 metacaspase 2a, metacaspase 7 (.1) AT5G04200 84 / 4e-18 AtMCP2f, ATMC9 metacaspase 2f, metacaspase 9 (.1) AT1G16420 80 / 2e-16 AtMCP2e, ATMC8 metacaspase 2e, ARABIDOPSIS THALIANA METACASPASE 8, metacaspase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010766 [exp] 354 / 1e-122 AT1G02170 293 / 1e-98 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10009321 [exp] 322 / 1e-107 AT1G02170 327 / 8e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10015843 [exp] 311 / 2e-103 AT1G02170 329 / 2e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10028157 [exp] 268 / 2e-86 AT1G02170 540 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10042857 [exp] 234 / 2e-74 AT1G02170 501 / 3e-179 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035630 [exp] 219 / 2e-68 AT5G64240 214 / 1e-66 metacaspase 1a, metacaspase 3 (.1.2) Lus10010764 [exp] 201 / 3e-57 AT1G02170 216 / 5e-62 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10012106 [exp] 85 / 4e-18 AT5G04200 392 / 2e-137 metacaspase 2f, metacaspase 9 (.1) Lus10001761 [exp] 83 / 3e-17 AT1G79340 560 / 0.0 metacaspase 2d, metacaspase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G053100 [exp] 326 / 3e-109 AT1G02170 378 / 1e-129 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.014G052500 [exp] 267 / 7e-87 AT1G02170 513 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112200 [exp] 263 / 2e-85 AT1G02170 446 / 4e-157 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G113100 [exp] 254 / 9e-82 AT1G02170 471 / 3e-167 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112700 [exp] 248 / 1e-79 AT1G02170 460 / 9e-163 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052600 [exp] 225 / 1e-70 AT1G02170 254 / 8e-82 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053000 [exp] 219 / 3e-68 AT1G02170 208 / 4e-64 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052900 [exp] 211 / 1e-64 AT1G02170 198 / 6e-60 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.006G026500 [exp] 89 / 1e-19 AT5G04200 426 / 4e-151 metacaspase 2f, metacaspase 9 (.1) Potri.016G024500 [exp] 87 / 5e-19 AT5G04200 425 / 1e-150 metacaspase 2f, metacaspase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [flax] [poplar] Peptidase_CD PF00656 [flax] [poplar] Peptidase_C14 Caspase domain
Representative CDS sequence Show only first row Show all	>Lus10035628 pacid=23147427 polypeptide=Lus10035628 locus=Lus10035628.g ID=Lus10035628.BGIv1.0 annot-version=v1.0 ATGGGGGGCAGCAGCAGGAGGCAAAGATGCGGCAGGTGTGGGTTGCAGCTGATGGTTCCATCGGATTCCGAGACCTTCAGGTGCTCAGCCTGCCAATCCA TCACAAAGGTTTCTCCTGTGTCTCCAATTCGTGGTGCCATCAACAAGCTAACCAACCGGTTCTCCACCAGTCCTCCTGTCAAAGCAGGGCCCACTCCCGC CGCCGTTCCAATATCATCAGTCGGTGGACCCACCCACCACCACCAGCCGCCAGTCACCATTCACTACGGTGGTGGATACGGATACGGTCCGACCCCGGCA GTTGATCATCATAATCAAGGTCGAGGAGGGAGGAAGAAGGCGTTGCTGTGCGGGGTTAGCTACAAGGATAAGAGTTACAGAATCAAAGGAAGCATCAACG ACGTGAATTGCATGAGGTATTTCCTCATCCACAAGTTCGGATACCCTGCCGAATCCATCCTGACACTCACAGAAGAGGAAGTCAATCCAAAGAGAATACC AACAAAGGAGAACATAAGAAGAGGGATGAAGTGGCTAGTAGAAGGGTGCAAGGCAGGGGACTCTCTGGTGTTCTATTTCTCGGGTCACGGTACCCAGCAG CGTGACTGCGACATGGACGAGCTGGATGGGTTTGACGAGACGCTGTGCCCTTTGGACTTCGAGATGGAAGGAATGATCATCGACGATGAGATCAATTCGA CGATCGTTGCGCCGCTCCCACCGGGGACTGTTCTTCACGCTATCGTTGATTCGTGCCACAGTGGTACGGTTCTTGATCTACCGTTTGTCGGCCGCGTCAA CACGGAAGGGCAGTACGCGTGGGAGGATCATCGGCGGTCGGATTACAGTGGCAAGAAAGATACGAGTGGAGGGCTGGCTCTTTGCATCAGTGCTTGTAAC GATCATCAAACCAGTGCCGATACCAATAAATGTATCGACGGGGGCATTAACGTAAAGCTTAATCCAAGCGGTGCAAAACGAGCCCGGAATCAGCTACGGG CGGTTGTTGAATGCAATGCGGGTAGCAATCCGAGCAGCCAGGTCCCAGGGTTTGCGCCTCAGCGGCCCCATCGCTTCCCTCGTCAACGTAGCTCTTTTTA G
AA sequence Show only first row Show all	>Lus10035628 pacid=23147427 polypeptide=Lus10035628 locus=Lus10035628.g ID=Lus10035628.BGIv1.0 annot-version=v1.0 MGGSSRRQRCGRCGLQLMVPSDSETFRCSACQSITKVSPVSPIRGAINKLTNRFSTSPPVKAGPTPAAVPISSVGGPTHHHQPPVTIHYGGGYGYGPTPA VDHHNQGRGGRKKALLCGVSYKDKSYRIKGSINDVNCMRYFLIHKFGYPAESILTLTEEEVNPKRIPTKENIRRGMKWLVEGCKAGDSLVFYFSGHGTQQ RDCDMDELDGFDETLCPLDFEMEGMIIDDEINSTIVAPLPPGTVLHAIVDSCHSGTVLDLPFVGRVNTEGQYAWEDHRRSDYSGKKDTSGGLALCISACN DHQTSADTNKCIDGGINVKLNPSGAKRARNQLRAVVECNAGSNPSSQVPGFAPQRPHRFPRQRSSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10035628 [exp]	0	1
AT3G53940			Mitochondrial substrate carrie...		Lus10012658 [exp]	1.0	0.9643
AT3G44910		ATCHX12	cation/H+ exchanger 12, cation...		Lus10040962 [exp]	2.6	0.9055
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10017952 [exp]	3.2	0.8986
					Lus10025164 [exp]	3.5	0.9225
					Lus10042024 [exp]	4.5	0.9251
					Lus10018996 [exp]	8.0	0.9107
					Lus10030762 [exp]	11.0	0.9059
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10028979 [exp]	11.4	0.8473
AT2G14100		CYP705A13	"cytochrome P450, family 705, ...		Lus10024582 [exp]	11.5	0.8879
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10007367 [exp]	11.8	0.9065

Compare expression of checked genes

Lus10035628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.