Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64240 214 / 1e-66 AtMCP1a, ATMC3 metacaspase 1a, metacaspase 3 (.1.2) AT1G02170 207 / 5e-64 AtMCP1b, ATMC1, LOL3, ATMCPB1, MCP1B, AMC1 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) AT4G25110 195 / 9e-59 AtMCP1c, ATMC2 metacaspase 1c, metacaspase 2 (.1.2) AT1G79340 112 / 9e-28 AtMCP2d, ATMC4 metacaspase 2d, metacaspase 4 (.1) AT1G79310 109 / 1e-26 AtMCP2a, ATMC7 metacaspase 2a, metacaspase 7 (.1) AT1G16420 105 / 3e-25 AtMCP2e, ATMC8 metacaspase 2e, ARABIDOPSIS THALIANA METACASPASE 8, metacaspase 8 (.1) AT1G79320 103 / 6e-25 AtMCP2c, ATMC6 metacaspase 2c, metacaspase 6 (.1) AT1G79330 102 / 5e-24 ATMC5, AMC6, ATMCP2B metacaspase 2b, metacaspase 5 (.1) AT5G04200 100 / 6e-24 AtMCP2f, ATMC9 metacaspase 2f, metacaspase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010764 [exp] 478 / 7e-160 AT1G02170 216 / 5e-62 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10009321 [exp] 226 / 1e-70 AT1G02170 327 / 8e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10015843 [exp] 225 / 2e-70 AT1G02170 329 / 2e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10010766 [exp] 216 / 2e-68 AT1G02170 293 / 1e-98 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035628 [exp] 219 / 3e-68 AT1G02170 270 / 4e-88 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10042857 [exp] 214 / 1e-66 AT1G02170 501 / 3e-179 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10028157 [exp] 205 / 4e-62 AT1G02170 540 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10001761 [exp] 112 / 1e-27 AT1G79340 560 / 0.0 metacaspase 2d, metacaspase 4 (.1) Lus10012106 [exp] 109 / 5e-27 AT5G04200 392 / 2e-137 metacaspase 2f, metacaspase 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G052600 [exp] 321 / 4e-108 AT1G02170 254 / 8e-82 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053000 [exp] 280 / 5e-92 AT1G02170 208 / 4e-64 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052900 [exp] 278 / 6e-91 AT1G02170 198 / 6e-60 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053100 [exp] 239 / 1e-75 AT1G02170 378 / 1e-129 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112200 [exp] 226 / 4e-71 AT1G02170 446 / 4e-157 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G113100 [exp] 220 / 8e-69 AT1G02170 471 / 3e-167 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112700 [exp] 214 / 2e-66 AT1G02170 460 / 9e-163 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.014G052500 [exp] 211 / 2e-65 AT1G02170 513 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.010G175000 [exp] 105 / 4e-25 AT1G79340 496 / 2e-175 metacaspase 2d, metacaspase 4 (.1) Potri.008G081100 [exp] 100 / 3e-23 AT1G79330 510 / 0.0 metacaspase 2b, metacaspase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [flax] [poplar] Peptidase_CD PF00656 [flax] [poplar] Peptidase_C14 Caspase domain
Representative CDS sequence Show only first row Show all	>Lus10035630 pacid=23147620 polypeptide=Lus10035630 locus=Lus10035630.g ID=Lus10035630.BGIv1.0 annot-version=v1.0 ATGGATGCAAGAAGACATCCATTCGCGGAGGTGAAACGAGGATTGCCGAAGATATTATTGTCGTCGGAGAGAAGAAAGGCCGACGACGAGATAGTTTCAA TCGGTGGGAGAAGGAGAACAAGAGACAGAGTGAGCGAGCTGTGCAAAAGGATCTGCGGCCAGCTGCATCTCGAAAACGTGGGCTCCGGCTCGTCAGAAAC GTCGACGTATGAGTCTCTTAACAGCAAGCCCTCCCCATTGCATAGAGCCGACGACAACCGCGCCGGTGGGTGGAGGAGGAAGAGAGCTCTTCTGATCGGC GTTACGTACAAGAGCTGGAAATACAAGCTTAAAGGGACCATCAACGATGTCAACAACATCAGGTCGTTGCTGATTCATCAGTTCGGCTTCCCAACAAATG ATATACTCGTCCTCACAGAAGAGGAGCAGGACCCGGAATTGACACCAACAAAGAAGAACATAAAAAGAAGTATGGAATGGCTAGTGAGAGGATGCGACTC AGGGGACTCGTTGGTCTTCTACTTCTCCGGTCACGGCGTCCGGCAACCGGACATGAACAACGATGAGCAAGACGGGTTCGACGAGACGATCTGCCCGTCC GATTTCATGGAAGCAGGACTTATCTTTGACAATGATATCAATCGGACCATCGTCTGGCCGCTGAAGAAAGGAGTCGTTCTCCACGCCATTGTTGATTCCT GCCACAGTGGGACCATCCTCGACCTCGCTTTTGTCTACCACCGTGATGGGAAACAGTGGGAGGAGGACGTGGGAAGACAATCGGGCACCATCGGGTGCAC GGAAACACACGGAAGGCGGGCATTTGGGAAGGGGGTGATGAGTGGAGCAATGACGTACATCTTGGTGGAGGTTTTAAAGCAATTCCCAAATCCAACTTAC GGTGAGTTGATGGAATTGATGCATCAGGCACTCATTGAGGTGAATAAGAGCGGGTGTTTCCTTTCCCGGATGTTCAGATCCATCTTCAATAACAAGATTT TGCAGAAGCCATTGCTGTCTGCTTCCCAACCATTTGATGTCAGCAACAAGCACTTCACTCTGTAA
AA sequence Show only first row Show all	>Lus10035630 pacid=23147620 polypeptide=Lus10035630 locus=Lus10035630.g ID=Lus10035630.BGIv1.0 annot-version=v1.0 MDARRHPFAEVKRGLPKILLSSERRKADDEIVSIGGRRRTRDRVSELCKRICGQLHLENVGSGSSETSTYESLNSKPSPLHRADDNRAGGWRRKRALLIG VTYKSWKYKLKGTINDVNNIRSLLIHQFGFPTNDILVLTEEEQDPELTPTKKNIKRSMEWLVRGCDSGDSLVFYFSGHGVRQPDMNNDEQDGFDETICPS DFMEAGLIFDNDINRTIVWPLKKGVVLHAIVDSCHSGTILDLAFVYHRDGKQWEEDVGRQSGTIGCTETHGRRAFGKGVMSGAMTYILVEVLKQFPNPTY GELMELMHQALIEVNKSGCFLSRMFRSIFNNKILQKPLLSASQPFDVSNKHFTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64240		AtMCP1a, ATMC3	metacaspase 1a, metacaspase 3 ...		Lus10035630 [exp]	0	1
AT2G18196			Heavy metal transport/detoxifi...		Lus10008284 [exp]	1.0	0.9808
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10033405 [exp]	1.4	0.9746
AT3G45070			P-loop containing nucleoside t...		Lus10003070 [exp]	1.7	0.9711
AT4G24450		PWD, GWD3, ATGW...	"phosphoglucan, water dikinase...		Lus10032829 [exp]	4.0	0.9398
AT1G69970		CLE26	CLAVATA3/ESR-RELATED 26 (.1.2)		Lus10010735 [exp]	4.9	0.9505
AT2G30540			Thioredoxin superfamily protei...		Lus10040899 [exp]	4.9	0.9442
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10010831 [exp]	5.2	0.9377
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10032295 [exp]	5.9	0.9113
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027846 [exp]	7.4	0.9356
AT1G55200			Protein kinase protein with ad...		Lus10040097 [exp]	7.6	0.8951

Compare expression of checked genes

Lus10035630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.