Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22310 133 / 3e-33 ATMBD8, MBD8 methyl-CPG-binding domain 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010764 [exp] 1211 / 0 AT1G02170 216 / 5e-62 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G312900 [exp] 457 / 2e-149 AT1G22310 110 / 1e-25 methyl-CPG-binding domain 8 (.1.2) Potri.005G164100 [exp] 238 / 1e-65 AT1G22310 100 / 6e-22 methyl-CPG-binding domain 8 (.1.2) Potri.002G097700 [exp] 232 / 9e-64 AT1G22310 105 / 2e-23 methyl-CPG-binding domain 8 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035631 pacid=23147523 polypeptide=Lus10035631 locus=Lus10035631.g ID=Lus10035631.BGIv1.0 annot-version=v1.0 ATGGCTGCTGTTGCTGCAACTACCAACCCTCACCCACCGTGTTTGGTCGAAACCCTAGATTTACTCCCTTCAATCGACATGGCCAGCCTCTCCCAATCCG AACTCCACGCACTTTCCCTCGGCTCTTCTTCTGCTTCGATCGCCGCCTCTCGTACCAGCAAACCCGCTATTCCAGCCATCAACCGCTCTATCTTCAATGA GAGCGCCGGTTCCCGCAGGCAGACCTTCTCCCGTCCCTCCCCTCACCACCACCACCACCACCGTCACCGCCTCGCTGGAGTTCTCCCTAAAGCATCCACC TCAGCTGATCCTCCGCCTGCTCACGAATATACGCATGACCCGGCCAACGACCCTGACCGTCCGGAGAACCTCTCCATCATCCATTTCCTGAAGCAATTTC TCGCCGCTCACCCGGACTTCCAGCAAGAGGAGTTTGATTTCTTCAGCCATTTCAACAACAATTCTGTTCAACTCGTCCCCGTTGCTCCTTCGCCTCAAAA GAAGAGGAAAAGAGGAAGGAAGCCTGGTAAGATGAAGCTGATGATGGTGAACACGGAGCAGCTGCAGCGGCCGGAAGAGAAGAGATTTGCTGAGAAATTG GAAGTTGTGAACAAGCATGGAGCCGTGGTAGATTTAGTGCAGCTGGCGGGTTTGGAGGATCCATTCAGGGAGGAATTGAGGAGGAGGACTGTAGGAATGT CGAAAGAAGATGAATTGTTAGGGTTTTTTAGGGATCTGGAAGGGGAGTGGTGCAGTAGGAGGAGGAAGAGGAAGTTTGTTGATGCTTGTGTTCTTGGTGA TGCTTTGCCGGTTGGTTGGAAGCTTCTGCTTGCGATTAAGAGGAAAGAAGGCCGTGCTTGGGTGTATTGCCGCAGATATGTCAGTCCTGGTGGACAACAT TTCCTATCATGCAAAGAAGTCTCCGAGTATATGCAATCTGTTCTTGGAAATCATAGTGCACCACAGGGAAAGGACTTGACGAATGATGATAATCAGTTGG ACAACAGAGTGATTTCTGTCACGAATTATCATGTTAAAAGGGAGGATGGTGATGGGGGGCAGTCCGACAAACGTGGCAAAGAACTCCAGGTGCTTGGGAT GGATAATCTGGCTGGAGTTGAATTACATGATCTTTTTGAATGCCATAAATGCAATATGACGTTAGGTGATAGGGACTTGTATCTGAATCACCTTTTGTCT TATCACCAGAAGACAACCAGGAAGTTTCGACTCGGGTCGTCTGTTGGAGACGGTGTGATAGTAAAAGACGGCAAGTATGAATGCCAGTTCTGTCACAAAG TGTTTCACGAAAGACGCCGATACAACGGTCATGTTGGCGTTCACGTAAGGAATTACGTGAGAGGGGTCGAAGAATCACCTGTCGAAAGAATGGCACTGCA GAAGCAAACCGACAGTCTTGTGGAGGATGATGAGCTGTCTGCCGCCAAAATCTCTAAAATGGACGCTTTGATCGAAATTGCACAGAGTTCTATTCTTGAA GCCTCCTCTTCTGTGCCTAACCATGAGGGACTTAGTTCTGATAAAGACAATGCAAATTCTGATCCTGTTCCTATTTCAGTTATATATACTGAAGCGGCAA CTAGTGCGAAAGCTCCTGAACTGGAGGTTCAAAAGGAGGGTGTTGGCATCATTGAAGAATTGGAGAATGCTGCTGGAGGTAGTGAAGTTGCGAGGATAAA TTCCTCATTAAGTGCTCAACTGCATCCTGTATCTGAAGTTGTCGAAGGAAAATGTGGTCTGGCGTTTAACCATGAAGGTAAAGGTGAAGGGTTTACTACT GGTTCTTCAGTCGGGCTGTTTGGAGCACGACTCCCCGTGAATATGGCAGTCGGTTCTTCGGGTATTGAAGGTGGACCAGTTCATACCGCTGGAGCTACTG GAGCGGTGATCTTGATGTCAACAGAATCAACACCTTTTGCAATGCTTGATAAGGAAGAGAATGGATTTGATGTAGGAGTTGACGAACTGAGGGTGGAGGA CATGGAACTAGTTGGTCTGGAGACTGAACAAGAAGAATCCCTCATGGCGACTCAAGGTGGTCCGATGCACAAAGTTATAGGAGCTGAGATGGAAAGCATG TGCAACGTGTCGGGGCCGCTAGACTCGGGATTCGAATCAGGTATGGTTCAGGGATCAGAAGAGTTGTTCCCGACAATGTGTACTTGGTGCGGTGTGGAGT TCGGGTATGCATCTTCAGGTAGCGGCGCGCAGTCTGGATCAGCCGGTTATATGTGTCACAGCTGCAGGCTGAAAGTTTCGATGGAGGTTGATGGATGA
AA sequence Show only first row Show all	>Lus10035631 pacid=23147523 polypeptide=Lus10035631 locus=Lus10035631.g ID=Lus10035631.BGIv1.0 annot-version=v1.0 MAAVAATTNPHPPCLVETLDLLPSIDMASLSQSELHALSLGSSSASIAASRTSKPAIPAINRSIFNESAGSRRQTFSRPSPHHHHHHRHRLAGVLPKAST SADPPPAHEYTHDPANDPDRPENLSIIHFLKQFLAAHPDFQQEEFDFFSHFNNNSVQLVPVAPSPQKKRKRGRKPGKMKLMMVNTEQLQRPEEKRFAEKL EVVNKHGAVVDLVQLAGLEDPFREELRRRTVGMSKEDELLGFFRDLEGEWCSRRRKRKFVDACVLGDALPVGWKLLLAIKRKEGRAWVYCRRYVSPGGQH FLSCKEVSEYMQSVLGNHSAPQGKDLTNDDNQLDNRVISVTNYHVKREDGDGGQSDKRGKELQVLGMDNLAGVELHDLFECHKCNMTLGDRDLYLNHLLS YHQKTTRKFRLGSSVGDGVIVKDGKYECQFCHKVFHERRRYNGHVGVHVRNYVRGVEESPVERMALQKQTDSLVEDDELSAAKISKMDALIEIAQSSILE ASSSVPNHEGLSSDKDNANSDPVPISVIYTEAATSAKAPELEVQKEGVGIIEELENAAGGSEVARINSSLSAQLHPVSEVVEGKCGLAFNHEGKGEGFTT GSSVGLFGARLPVNMAVGSSGIEGGPVHTAGATGAVILMSTESTPFAMLDKEENGFDVGVDELRVEDMELVGLETEQEESLMATQGGPMHKVIGAEMESM CNVSGPLDSGFESGMVQGSEELFPTMCTWCGVEFGYASSGSGAQSGSAGYMCHSCRLKVSMEVDG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10035631 [exp]	0	1
AT1G20920			P-loop containing nucleoside t...		Lus10035328 [exp]	2.4	0.8942
AT1G20920			P-loop containing nucleoside t...		Lus10035327 [exp]	3.7	0.8825
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000472 [exp]	5.2	0.8773
AT1G20920			P-loop containing nucleoside t...		Lus10029986 [exp]	8.8	0.8524
AT1G03280			Transcription factor TFIIE, al...		Lus10011554 [exp]	14.1	0.8689
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10037299 [exp]	16.3	0.8440
AT5G19910		MED31	SOH1 family protein (.1.2)		Lus10016131 [exp]	20.1	0.8658
AT4G08580			microfibrillar-associated prot...		Lus10020319 [exp]	20.5	0.8535
AT5G18610			Protein kinase superfamily pro...		Lus10033966 [exp]	21.4	0.8579
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029625 [exp]	23.3	0.8337

Compare expression of checked genes

Lus10035631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.