Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57190 357 / 3e-118 PSD2 phosphatidylserine decarboxylase 2 (.1) AT4G25970 350 / 8e-116 PSD3, PSD2 phosphatidylserine decarboxylase 3 (.1) AT5G08580 45 / 6e-05 Calcium-binding EF hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010761 [exp] 463 / 7e-160 AT5G57190 838 / 0.0 phosphatidylserine decarboxylase 2 (.1) Lus10015838 [exp] 410 / 1e-141 AT5G57190 561 / 0.0 phosphatidylserine decarboxylase 2 (.1) Lus10009324 [exp] 343 / 3e-112 AT5G57190 891 / 0.0 phosphatidylserine decarboxylase 2 (.1) Lus10015839 [exp] 57 / 7e-09 AT4G25970 381 / 4e-130 phosphatidylserine decarboxylase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G172400 [exp] 405 / 9e-137 AT4G25970 966 / 0.0 phosphatidylserine decarboxylase 3 (.1) Potri.003G061700 [exp] 395 / 6e-133 AT5G57190 956 / 0.0 phosphatidylserine decarboxylase 2 (.1) Potri.005G215700 [exp] 44 / 3e-05 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.002G047300 [exp] 43 / 0.0002 AT3G22930 171 / 3e-54 calmodulin-like 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035633 pacid=23147491 polypeptide=Lus10035633 locus=Lus10035633.g ID=Lus10035633.BGIv1.0 annot-version=v1.0 ATGGGACATGGCAGCTCCAAACACTCCTCCTCTTCATCCGACGAAGGGGAGAGATCGTCGTCGCGGTTGTCTTCAATGGCGGCGAAGCTTCACATTCGCA GCAAACACGGAAGTCGTCGCCGCCGCCTTCGCAACAAACTGTTTCGCCGGTCCAGTTCGAAGAGGAATGGCTCCGGGTCCACCGCTGGACACGGTAAAAA CACCAACAAGCTAGTCTCTGAGGACGATTTTGCTGGAATTGCGCTTCTTACTCTCATCGGCGATTTTGATTCAGATGCTGAAGCTTTTGACCTTATTGAT CCATCATCATCTCATATTGCGGTTGGAAAAATTACTCTATCATGTGATGTTGAGGACTACAATGAAGATGGATTACTTTCATTTCCAGAATTTTCAGACT TGATTAATGCTTTCGGGAATAAGCTGGCGGATAACAAGAAAGAGGAGCTTTTCAAAGCTGCAGACAAGAACCAGGATGGCGTTGTGAGCTTAGATGAGTT GGCTGATCTCCTTGCCAATCAACAAGAAAAGGAGCCTTTAATAAACTGTTGTCCTGTTTGTGGCGAGATTCTTCAAGTTTCTGACAAGCTGAGCACAGTA GTGCATTTGAGTCTTTGTTTTGATGAGGGGACGGGAAACCAAGTTATGACAGGAGGATTTTTGACTGATAAACAAGCTTCATACGGCTGGATGTTTAAAC TAAGTGAATGGGCTCACTACTCATCTTATGATTTTGGTTTGAACTCGGGATCAAGTTCCTCACATATTCTGGTATTTGATCGGAAGACAAAGAGGCTTGT GGAAGAATTAATTGATGGGAAGATAGTTCTATCAATGAGAGCAATTTACCAGTCCAAGATTGGACTTCGCCTCATGGACAAAGGGGCAAAAGAAATCTTG CAAAGCATCTCTGAGAAGCAAGGGAGGAAAATGAACTCACTTGATTCAGCTAAAGACATTCCCAAAAGTCTTATTTCAGATGTGGTTTCCATACTTTTGC AGGGCAAAAAGTTCTCGATTGAAGGTCTCTTGGGAAACAAGATATGTTCCAAGGCTTTCATGAATGGAACTGTAGTTATATTTCGGTTGGCACCTCAGGT TTTCTTCTACTTTCTCAGAAACTGCAGTCTGGCTGAAATGCATATTTCAGAAGAGGGCTTGGAGTAG
AA sequence Show only first row Show all	>Lus10035633 pacid=23147491 polypeptide=Lus10035633 locus=Lus10035633.g ID=Lus10035633.BGIv1.0 annot-version=v1.0 MGHGSSKHSSSSSDEGERSSSRLSSMAAKLHIRSKHGSRRRRLRNKLFRRSSSKRNGSGSTAGHGKNTNKLVSEDDFAGIALLTLIGDFDSDAEAFDLID PSSSHIAVGKITLSCDVEDYNEDGLLSFPEFSDLINAFGNKLADNKKEELFKAADKNQDGVVSLDELADLLANQQEKEPLINCCPVCGEILQVSDKLSTV VHLSLCFDEGTGNQVMTGGFLTDKQASYGWMFKLSEWAHYSSYDFGLNSGSSSSHILVFDRKTKRLVEELIDGKIVLSMRAIYQSKIGLRLMDKGAKEIL QSISEKQGRKMNSLDSAKDIPKSLISDVVSILLQGKKFSIEGLLGNKICSKAFMNGTVVIFRLAPQVFFYFLRNCSLAEMHISEEGLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10035633 [exp]	0	1
AT3G27870			ATPase E1-E2 type family prote...		Lus10022238 [exp]	2.0	0.9469
AT1G06840			Leucine-rich repeat protein ki...		Lus10034445 [exp]	3.0	0.9469
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10037970 [exp]	3.5	0.9445
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	6.3	0.9565
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	6.9	0.9513
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029269 [exp]	8.4	0.9450
AT3G57330		ACA11	autoinhibited Ca2+-ATPase 11, ...		Lus10042040 [exp]	11.0	0.9394
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10031069 [exp]	13.4	0.9398
					Lus10004442 [exp]	15.3	0.9242
AT2G46600			Calcium-binding EF-hand family...		Lus10005985 [exp]	16.9	0.9374

Compare expression of checked genes

Lus10035633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.