Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09550 754 / 0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) AT3G59920 702 / 0 ATGDI2 RAB GDP dissociation inhibitor 2 (.1) AT2G44100 695 / 0 AT-GDI1, ATGDI1 guanosine nucleotide diphosphate dissociation inhibitor 1 (.1.2) AT3G06540 100 / 5e-22 AthREP Rab escort protein (.1) AT1G49480 53 / 1e-07 B3 REM19, RTV1 related to vernalization1 1 (.1) AT3G18990 51 / 9e-07 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010760 [exp] 863 / 0 AT5G09550 778 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) Lus10027094 [exp] 725 / 0 AT3G59920 800 / 0.0 RAB GDP dissociation inhibitor 2 (.1) Lus10008341 [exp] 723 / 0 AT3G59920 800 / 0.0 RAB GDP dissociation inhibitor 2 (.1) Lus10010756 [exp] 93 / 2e-20 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002426 [exp] 66 / 6e-13 ND 37 / 0.001 Lus10027940 [exp] 48 / 1e-05 AT3G18990 371 / 4e-128 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10012041 [exp] 48 / 2e-05 AT3G18990 388 / 8e-135 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10021006 [exp] 45 / 2e-05 AT1G49480 138 / 5e-42 related to vernalization1 1 (.1) Lus10009214 [exp] 40 / 0.0003 AT1G49480 40 / 6e-05 related to vernalization1 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G115300 [exp] 776 / 0 AT5G09550 785 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) Potri.017G001200 [exp] 732 / 0 AT2G44100 776 / 0.0 guanosine nucleotide diphosphate dissociation inhibitor 1 (.1.2) Potri.007G146600 [exp] 716 / 0 AT2G44100 777 / 0.0 guanosine nucleotide diphosphate dissociation inhibitor 1 (.1.2) Potri.005G028900 [exp] 118 / 4e-28 AT3G06540 605 / 0.0 Rab escort protein (.1) Potri.005G030000 [exp] 109 / 4e-25 AT3G06540 602 / 0.0 Rab escort protein (.1) Potri.004G147000 [exp] 54 / 2e-07 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 52 / 5e-07 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 50 / 2e-06 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 50 / 4e-06 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.010G191500 [exp] 49 / 5e-06 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00996 [flax] [poplar] GDI GDP dissociation inhibitor
Representative CDS sequence Show only first row Show all	>Lus10035634 pacid=23147558 polypeptide=Lus10035634 locus=Lus10035634.g ID=Lus10035634.BGIv1.0 annot-version=v1.0 ATGGATGAAGAGTATGATGTAATAGTTATCGGGACTGGTCTCAAGGAATGCATCCTCAGTGGCCTTCTCTCTGTCAATGGCCACAAGGTGTTGCATATGG ATCGAAATGATTATTACGGGGGAGCTTCTACTTCTCTTAATCTCAATCAGCTCTGGAAGCGATTCCGTGAGAATGATACGCCTCCCGAAGGCCTTGGAGC TAGCAAAGAGTACAATGTCGATATGGTGCCAAAGTTTATCATTGCCAATGGCAAGTTGGTCCGAGTTCTGATCCATACTGGTGTCACCAAGTACCTAAAT TTCAAAGCTGTTGATGGAAGTTATGTGTACAACAAGAACAAGATTCACAAAGTTCCTGCAAATGATGTGGAAGCTCTGAAGTCGCCACTTATGGGACTAT TCGAGAAGCGTCGGGCTCGAAAGTTCTTCATCTATGTACAGGACTACGAGGATTCTGATCCTAAATCTCACGAGGGGTTGGATTTGACCAAAGTTACCGC TAGAGAAATTATCTCAAAATATGGGTTGGAGGATGACACAATCGACTTCATTGGACATGCATTGGCACTTCATCATGATGATAGTTATTTGGATCAACCA GCATATATTTTCGTAAAGAGAATAAAACTTTATGCTGAATCATTGGCACGTTTCCAAGGAGGATCCCCTTATATTTACCCTCTTTACGGCCTCGGAGAAT TACCTCAGGCATTTGCTCGCTTGAGTGCAGTTTATGGGGGAACCTATATGCTCAACAAACCAGACTGCAAAGTGGAATTTGATGAAAGCGGGAAAGCCAT AGGTGTCACCTCCGAGGGAGAGACTGCAAAGTGCAAGAAAGTTGTGTGTGACCCTTCCTATTTACCCGACAAGGTTAAGAAGGTGGGCAGAGTAGCTCGT GCCATATGCATAATGAGCCACCCGATTCCCAACACGCACGACTCTCATTCGGTTCAGCTCATACTCCCGCAAAAGCAGCTGGGTCGCAAATCGGATATGT ACCTGTTCTGCTGCTCTTACGCCCATAACGTGGCTGCAAAGGGGAAGTACATTGCGTCCGTTTCGACGGAGGCAGAGACTGATAACCCTGAGGCTGAACT GAAGCCAGGGGTCGACCTGCTTGGACCGTTGGATGAGATCTTTTATGATTGTTATGACCGATGTGTCCCCACTAATACTGCTGACGATGACAATTCCTTC GTCTCTACCAGTTATGATGCAACGTCACATTTCGAGACAACTGTGGATGACGTTATCGAGATTTACCGTAAGATCACTGGAAAGGACCTTGATCTGTCGG TTGACTTGAGTGCTGCAAGTGCGGCATCAGACGAATTGGGGTTCATTGCAGGTGATACCGAGTTCATTTGCGAGAGAGCATATTCTCAAGGGAGGGAATG GTGGTACTACTACAGTAGTGTGGTTCTTCAGATGGGGGAAGGTGCTGCAGCAAGTAAGCAGTGGAGTGTGGAACTGGTGAAGAGGAGGAGAGTGAAATCT GGTTCAATCTTTTGTGTGAATTACGGACAAGCATGGCGACAGTTTAATGATGACAACAATCTGGAGGAGGGAGATGTTTGCCTGTTTCACCTCGTCTCTA CAGAGGACATTGTTTTCGATGTCTCTGTATTTCCTGCATCCCACTGA
AA sequence Show only first row Show all	>Lus10035634 pacid=23147558 polypeptide=Lus10035634 locus=Lus10035634.g ID=Lus10035634.BGIv1.0 annot-version=v1.0 MDEEYDVIVIGTGLKECILSGLLSVNGHKVLHMDRNDYYGGASTSLNLNQLWKRFRENDTPPEGLGASKEYNVDMVPKFIIANGKLVRVLIHTGVTKYLN FKAVDGSYVYNKNKIHKVPANDVEALKSPLMGLFEKRRARKFFIYVQDYEDSDPKSHEGLDLTKVTAREIISKYGLEDDTIDFIGHALALHHDDSYLDQP AYIFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPDCKVEFDESGKAIGVTSEGETAKCKKVVCDPSYLPDKVKKVGRVAR AICIMSHPIPNTHDSHSVQLILPQKQLGRKSDMYLFCCSYAHNVAAKGKYIASVSTEAETDNPEAELKPGVDLLGPLDEIFYDCYDRCVPTNTADDDNSF VSTSYDATSHFETTVDDVIEIYRKITGKDLDLSVDLSAASAASDELGFIAGDTEFICERAYSQGREWWYYYSSVVLQMGEGAAASKQWSVELVKRRRVKS GSIFCVNYGQAWRQFNDDNNLEEGDVCLFHLVSTEDIVFDVSVFPASH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09550			GDP dissociation inhibitor fam...		Lus10035634 [exp]	0	1
AT4G38590		BGAL14	beta-galactosidase 14 (.1.2)		Lus10005070 [exp]	2.2	0.9782
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10026697 [exp]	3.5	0.9772
AT3G26790	B3	FUS3	FUSCA 3, AP2/B3-like transcrip...		Lus10012573 [exp]	3.9	0.9753
AT2G03630			unknown protein		Lus10029645 [exp]	4.5	0.9712
					Lus10034143 [exp]	5.0	0.9712
AT1G47790			F-box and associated interacti...		Lus10031533 [exp]	10.4	0.9508
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10037470 [exp]	14.0	0.8432
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10012272 [exp]	16.3	0.8821
AT5G67620			unknown protein		Lus10019264 [exp]	19.5	0.9207
					Lus10037567 [exp]	20.5	0.9587

Compare expression of checked genes

Lus10035634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.