Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 468 / 4e-161 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 458 / 3e-157 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 404 / 5e-136 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT2G25160 380 / 1e-126 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT3G25180 372 / 1e-123 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT4G37320 293 / 4e-93 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT5G07990 290 / 4e-92 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37400 288 / 2e-91 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT4G37360 285 / 4e-90 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37340 284 / 1e-89 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011657 [exp] 776 / 0 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032743 [exp] 756 / 0 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10010758 [exp] 752 / 0 AT4G31970 346 / 1e-114 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10028217 [exp] 550 / 0 AT4G31970 292 / 2e-95 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10007837 [exp] 471 / 2e-162 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032745 [exp] 470 / 9e-162 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011658 [exp] 431 / 1e-146 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038203 [exp] 425 / 8e-144 AT3G25180 495 / 9e-172 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Lus10025902 [exp] 412 / 4e-139 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G038100 [exp] 600 / 0 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038000 [exp] 593 / 0 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 588 / 0 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 572 / 0 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037800 [exp] 569 / 0 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037400 [exp] 563 / 0 AT4G31940 476 / 4e-164 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037600 [exp] 561 / 0 AT4G31940 478 / 7e-165 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037500 [exp] 512 / 3e-178 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037900 [exp] 493 / 6e-171 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.009G108600 [exp] 484 / 5e-168 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10035635 pacid=23147626 polypeptide=Lus10035635 locus=Lus10035635.g ID=Lus10035635.BGIv1.0 annot-version=v1.0 ATGGATTTCATACCCTCAATTTCTATCTCCTCTGCACTTATCATCATAGTACCCTCTCTCATTTTCTTCTACTTTCTCTTCCGACTATCAACCTCAGTCG TCGGCAACAACAAGAACCTAAACGCGCCGCTTCAGGCCGGCGGCGCATGGCCCATAATCGGGCATCTACATCTCTTAGGCGGACCTCGGCCCGCGCACAT AGTATTGGGCCAGATGGCAGACAAGTACGGCCCATTGTTCACCATCCGAATGGGCGTCCACGCGGCTGTGGTAGTCAGCAATTCGGAGCTGGCGAAGGAG TGTTTGACCACACACGACCAGATTTTCGCGGATAGACCCGCCACCCTAGCCATGGATTTAATCGGTTACAAAAGATCCATGTTCGGGTTCAGCCCGTACG GGCCGTACTGGCGAGAAACCCGGAAGATTGCCACTCTGGAATGTCTCTCCTCCCACCGCCTAAATTTGCTAAAACACGTGAGGGAGACGGAGGTTAATGT CGCAATAAAAGAGCTGTACGGGTATTGGTGCGGTAACGAACGAAACGGCGGCGTTTCGGTGGAGATGACCAGCTGGTTTGGGGACATTGCGTTGAACGTT ATACTCAAGATGATCGTACGAAAATCTATCGGGTACTTGAATCGAGGAGAAGACGGTGTTAGACTGAAGAAGGTGTTGAGAAGTTTCTTTGATCTTTCCG GAAGGTTCGTGGTGGCGGACGGTGTACCTTATCTGAGGTGGTTGGACGTGGGTGGGTTCGAGAAGGCGATGAGGAAGACGGCGGAGGAGATGGACGTTGT GGTGGGTGGGTGGCTGAAGGAGCATAAGGCCAAAAGAGATTCCGGCGGCGGGGTCACGGCGGAGGACGATTTCATGGATGTTATTCTGAATCTTGTCGGA GATGAAGGTGGCATATTGGATATAGATTCCGATACCGTTAACAAAGCTACTTCTCTGAGCCTTATCTTGGCGGGTGCAGACACAACAACAGTGACGATGA CTTGGTTGCTCGCATTACTTGTGAACCATCCTGATGTATTGCATAAAGCTCAAATCGAGCTGGATAACAATGTAGGTAGCCAAAGACAAGTTCAAGAGTC TGATCTCCACAACTTAGTTTATATGCATGCAATCGTCAAAGAGACCCTCCGCTTATACCCAGCTGGTCCTCTCGCCGTACCCCACCAAGCCACTGAAGAT TGCACAGTCGGTGGTTGTTTGGTTCGAAAAGGAACCAGACTCATAATCAACATATCTAAAATCCAGCGAGACCAACGGTTTTGGTCTGAAGCAGACAAGT TTGAACCGGAACGGTTCCTCTCGACACATAAGAACGTTGACGTCAAGGGCAAAAACTTCGAGCTGATGCCATTCGGAAGCGGGCGAAGGATGTGTCCTGC TGTAAACTTTGCCCTCAAGATCATGCACTTGACGGTGGCTAAACTTCTACACGGATTTGACTTTAAGAGAGCATCTATGAAACTTGTTGATATGACCGAG AGTATTGGACTGACCAATCCTCGAGCTTATCCTCTTGAAGTTATCTTATCTCCTCGCCTGCCTTCCCATTTGTACAGGTAA
AA sequence Show only first row Show all	>Lus10035635 pacid=23147626 polypeptide=Lus10035635 locus=Lus10035635.g ID=Lus10035635.BGIv1.0 annot-version=v1.0 MDFIPSISISSALIIIVPSLIFFYFLFRLSTSVVGNNKNLNAPLQAGGAWPIIGHLHLLGGPRPAHIVLGQMADKYGPLFTIRMGVHAAVVVSNSELAKE CLTTHDQIFADRPATLAMDLIGYKRSMFGFSPYGPYWRETRKIATLECLSSHRLNLLKHVRETEVNVAIKELYGYWCGNERNGGVSVEMTSWFGDIALNV ILKMIVRKSIGYLNRGEDGVRLKKVLRSFFDLSGRFVVADGVPYLRWLDVGGFEKAMRKTAEEMDVVVGGWLKEHKAKRDSGGGVTAEDDFMDVILNLVG DEGGILDIDSDTVNKATSLSLILAGADTTTVTMTWLLALLVNHPDVLHKAQIELDNNVGSQRQVQESDLHNLVYMHAIVKETLRLYPAGPLAVPHQATED CTVGGCLVRKGTRLIINISKIQRDQRFWSEADKFEPERFLSTHKNVDVKGKNFELMPFGSGRRMCPAVNFALKIMHLTVAKLLHGFDFKRASMKLVDMTE SIGLTNPRAYPLEVILSPRLPSHLYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10035635 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016176 [exp]	2.4	0.9142
					Lus10034297 [exp]	3.2	0.8511
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028852 [exp]	3.7	0.8553
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10002710 [exp]	9.2	0.8851
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10040275 [exp]	9.2	0.8841
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10000518 [exp]	11.1	0.8958
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10031088 [exp]	14.3	0.8819
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033786 [exp]	17.2	0.8478
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10022424 [exp]	17.5	0.8798
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10009710 [exp]	20.0	0.8247

Compare expression of checked genes

Lus10035635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.