Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01580 75 / 2e-15 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 74 / 5e-15 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 72 / 3e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 74 / 5e-14 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G33280 53 / 3e-07 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT4G34400 52 / 1e-06 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49480 50 / 1e-06 B3 REM19, RTV1 related to vernalization1 1 (.1) AT4G31640 49 / 5e-06 B3 REM5 transcriptional factor B3 family protein (.1) AT4G31690 44 / 0.0004 B3 REM9 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010756 [exp] 364 / 3e-122 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010759 [exp] 336 / 3e-111 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002425 [exp] 172 / 3e-50 AT4G01580 85 / 1e-20 AP2/B3-like transcriptional factor family protein (.1) Lus10012046 [exp] 104 / 7e-24 AT3G18960 82 / 7e-18 AP2/B3-like transcriptional factor family protein (.1) Lus10025669 [exp] 103 / 2e-23 AT3G18990 100 / 1e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027943 [exp] 99 / 8e-22 AT3G18960 76 / 9e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10002426 [exp] 89 / 5e-21 ND 37 / 0.001 Lus10012038 [exp] 92 / 7e-20 AT3G18990 67 / 5e-12 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10012040 [exp] 81 / 5e-17 AT4G01710 92 / 2e-23 CROOKED, ARP2/3 complex 16 kDa subunit (p16-Arc) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 91 / 3e-19 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 84 / 6e-17 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.009G108500 [exp] 79 / 1e-15 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 77 / 7e-15 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 76 / 2e-14 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 69 / 6e-13 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 61 / 2e-09 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 59 / 8e-09 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 50 / 8e-07 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 49 / 1e-05 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10035637 pacid=23147552 polypeptide=Lus10035637 locus=Lus10035637.g ID=Lus10035637.BGIv1.0 annot-version=v1.0 ATGGCGTCTCCTCATCATCATGCGCCCAAGAACCATTCAAGAACTTGGCCTTTTTCTTCTTCTTCTTCATCATCTTCCATAGAGAAGAAACCACACTCAA GTTTCTTCAGAATCATCCTCCCATACATCCTCGAAGAAAAGAAGTTGAAGCTGCCGTTGAAATTTGTTCGAAGATACAGATCCGAAGTTTCGTCGACTGC CAAACTGGCCTTACCGAATGGGCTTGAATGGAACGTTGGTGTGGAGAAGAACATGAACGAAGATGGCAATAAGAAAGAGGAAATCTGGTTCAGCGATGGG TGGGGTGAGTTTATGGAACACAATTCCATTTCCGAAGGATTCTTTTTGGTGTTTAAATACAGAGGATGCTCTGTTTTCGATGTTGAGATCTTCGACCTCA CCACTTGCTCAATTTCCTATCCTCCTCCTCCTCCTCAAGAAAGTGGTTTTCCGAATATTGTTGTGATTTCGGACGACGAAGAAGATGATAAATTTGGTGG TGGTGATGAGATGGTGAATACGCTGGAAAGTCTAAAAGCAAGCGGGATAGTAACTAGTTACTTCTTCTACATGAGGATCAGTAAGATGTACAGCAAGTGC AAGAAGGGCATAGAGGATGCGATACTAGTATCTAATCCTGCATATCCAAGTTTCATGCTCGTCTTGAATTCTGATAAGTCTGGAGACAGATACAAGCCTG CGATACCGATTTCATTTGCGAGAGAGCATATTCTGAAGAGTGCGGATACGACCACCACTACTACTACTACTACTAGTGTGGTTCTTCGGATGTCGTCGGA GAAGAAGCAGTGGAGTGTGGAAGTCGGGAATGACCGGAGGGTGAAGTCGGGTTCGTATTATTGTGTGAGTTTTCGACAAGGATGGCGACGGTTCAAGGAA GACAACAATTTGGGGGAGGGAGATGTTTGCCTCTTCCAACTCATTTCGCCAGAGGACCTTGTTATGGATAAGCTGCCGTTGAACTTTGTTCGAAGATACG GATCGGAAATTGCGTCTGTTGCCAAACTGTACTTACCGAACGGGGATGCATGTAAGGTTGGTGTGGAGAAGAAGAGGAAGGAAGATGGTAATAAGGGAGA TGAAATCTGGCTCAGCGATGGGTGGGGTGAGTGTATGGAACATCATTCCATTTCCAAAGGATTCTTTTTGGTGTTTAAATACAGAGGATGCTCTGTTTTC GATGTTGAGATCTTCGACCTCACCACTTGCTCAATTTCCTATCCTCCTCCATATCATGTTGTTGTGATTTCGGACGACGGCGACGACGAAAAAGATGAAA ATGTTGGTGGTGATGAGATGGAGAAGACGCTGGAGCCTCTAAAAGAAAGCGGGATAGTAACTAATCAATGGCTCAACGGGAGGATAAGGAGGATGTACAA AGAGTGCAAGAAGGGAATAGAGGATGCGGTACTAGCATCCAGTCCTGCACATCCTAGTTTCATCCTCGTCCTTAGTTCCGATCAGGTTGAAGGCAAATCC AGGCCTGTGATACCGATTTCATATGCGAGAGATCATATTCCGGACAGAGGGAAGACTAGAACTACTACTGTGGCTCTTCAGATGGGGGGATTCGGGAACT CGGTTAAGCAGTGGAGTGTTCAAGTGGCGAGGGGGAGTTCGGTATCATTTTGTTCTGTGACTTTAGCACAAGGATGGCGACAGTTCAACGAGGACAACAA TTTGGGAGTCGGAGATGTTTGCCTGCTTCATCTCGTCTCTCCGGAGGACCTTGTTTTCAATGTCTCTGTATTTCCAGCAGCCCAGTCAACTAATCATATA TGA
AA sequence Show only first row Show all	>Lus10035637 pacid=23147552 polypeptide=Lus10035637 locus=Lus10035637.g ID=Lus10035637.BGIv1.0 annot-version=v1.0 MASPHHHAPKNHSRTWPFSSSSSSSSIEKKPHSSFFRIILPYILEEKKLKLPLKFVRRYRSEVSSTAKLALPNGLEWNVGVEKNMNEDGNKKEEIWFSDG WGEFMEHNSISEGFFLVFKYRGCSVFDVEIFDLTTCSISYPPPPPQESGFPNIVVISDDEEDDKFGGGDEMVNTLESLKASGIVTSYFFYMRISKMYSKC KKGIEDAILVSNPAYPSFMLVLNSDKSGDRYKPAIPISFAREHILKSADTTTTTTTTTSVVLRMSSEKKQWSVEVGNDRRVKSGSYYCVSFRQGWRRFKE DNNLGEGDVCLFQLISPEDLVMDKLPLNFVRRYGSEIASVAKLYLPNGDACKVGVEKKRKEDGNKGDEIWLSDGWGECMEHHSISKGFFLVFKYRGCSVF DVEIFDLTTCSISYPPPYHVVVISDDGDDEKDENVGGDEMEKTLEPLKESGIVTNQWLNGRIRRMYKECKKGIEDAVLASSPAHPSFILVLSSDQVEGKS RPVIPISYARDHIPDRGKTRTTTVALQMGGFGNSVKQWSVQVARGSSVSFCSVTLAQGWRQFNEDNNLGVGDVCLLHLVSPEDLVFNVSVFPAAQSTNHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10035637 [exp]	0	1
AT1G76140			Prolyl oligopeptidase family p...		Lus10021835 [exp]	2.4	0.8708
AT5G14610			DEAD box RNA helicase family p...		Lus10035149 [exp]	3.5	0.8741
					Lus10041373 [exp]	3.7	0.8636
AT4G13230			Late embryogenesis abundant pr...		Lus10011889 [exp]	4.8	0.8907
					Lus10022997 [exp]	5.1	0.8489
					Lus10020451 [exp]	6.8	0.8887
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10027156 [exp]	7.7	0.7168
AT5G20990		B73, CNX1, SIR4...	SIRTINOL 4, CO-FACTOR FOR NITR...		Lus10000717 [exp]	8.1	0.8310
AT1G72200			RING/U-box superfamily protein...		Lus10041134 [exp]	8.1	0.7742
AT4G01310			Ribosomal L5P family protein (...		Lus10036391 [exp]	8.5	0.8748

Compare expression of checked genes

Lus10035637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.