Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18265 64 / 4e-12 Protein of unknown function, DUF593 (.1) AT5G16720 54 / 4e-08 Protein of unknown function, DUF593 (.1) AT1G18990 50 / 4e-07 Protein of unknown function, DUF593 (.1) AT4G13630 47 / 8e-06 Protein of unknown function, DUF593 (.1.2) AT4G13160 44 / 5e-05 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010755 [exp] 325 / 1e-113 AT5G16720 81 / 2e-17 Protein of unknown function, DUF593 (.1) Lus10007082 [exp] 125 / 2e-34 AT1G18265 78 / 2e-16 Protein of unknown function, DUF593 (.1) Lus10020457 [exp] 117 / 1e-31 AT1G18265 77 / 7e-16 Protein of unknown function, DUF593 (.1) Lus10004050 [exp] 53 / 8e-08 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 49 / 2e-06 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1) Lus10007129 [exp] 47 / 5e-06 AT4G13630 160 / 7e-42 Protein of unknown function, DUF593 (.1.2) Lus10016673 [exp] 44 / 9e-05 AT4G13630 237 / 6e-70 Protein of unknown function, DUF593 (.1.2) Lus10011854 [exp] 43 / 0.0001 AT4G13630 199 / 1e-56 Protein of unknown function, DUF593 (.1.2) Lus10022791 [exp] 42 / 0.0003 AT4G13630 200 / 2e-57 Protein of unknown function, DUF593 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G078800 [exp] 104 / 9e-27 AT1G18265 71 / 3e-14 Protein of unknown function, DUF593 (.1) Potri.012G073400 [exp] 50 / 5e-07 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.016G065200 [exp] 44 / 5e-05 AT5G06560 517 / 4e-180 Protein of unknown function, DUF593 (.1) Potri.006G199000 [exp] 42 / 0.0002 AT5G06560 523 / 0.0 Protein of unknown function, DUF593 (.1) Potri.010G109900 [exp] 42 / 0.0003 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1) Potri.008G132200 [exp] 41 / 0.0004 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.018G103500 [exp] 41 / 0.0005 AT5G57830 169 / 5e-48 Protein of unknown function, DUF593 (.1) Potri.004G087600 [exp] 41 / 0.0005 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1) Potri.017G129200 [exp] 41 / 0.0005 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.017G055100 [exp] 41 / 0.0006 AT4G13630 211 / 2e-59 Protein of unknown function, DUF593 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10035638 pacid=23147447 polypeptide=Lus10035638 locus=Lus10035638.g ID=Lus10035638.BGIv1.0 annot-version=v1.0 ATGGGGTGTGAAGTCTGCATCAAGTTCTTAGCTCAAATCAGCGACTTTGGTCTTGGGTTTTCGGTGTTGGGTTGTTTCTCTCATGCTTTCGATTTTCTAT GGCTTGTTTTTCTTTTGGCGTTTGGGCTGAAGCTGGTTCAGTCAATTGATCCCAGAAATGGGGTTTCTTGCCGAAAGGGTTCTGATTTCGCATTCAACTC CACAAAGATTGCGTCTTTCAAGGATAAGAATGATGAGGATGATGATGATGATGAGACTGAATTATACGGCGAAGATGAAGAATTTGACGTTGTGGCACTG AGGAGATTGGTTAAAACTGAGAGGCAGAGGAAACGAGCAGCAGAATTGGAAGTGGAGAAGGAAAGAACGGCGGCTTCATCCGCCGCTAATGAAGCAATGG CAATGATTCTGAGGCTTCAGAACGAGAAAAGCTCTCTGGAGATTGAAGTCAATCAGTACAGGAGAACGGCGGAACAGAACAAGGAGTATGCCCGACAGGT TATCCAATCGCTTCAGTGGATGATCACGAAACATGAAAGTGAGAGGAGGTTGCTGGAAGAGAAGCTCGGGATTTGCAGGCTGAAGTTGGAGAGACATGGA ATCATTGGTGAACTTGATTGTGATTTTGGTGATATGGAAGTTGAATCTTTAGCAGCTACTGTTATTGAGGCAACAAGTTGTTGA
AA sequence Show only first row Show all	>Lus10035638 pacid=23147447 polypeptide=Lus10035638 locus=Lus10035638.g ID=Lus10035638.BGIv1.0 annot-version=v1.0 MGCEVCIKFLAQISDFGLGFSVLGCFSHAFDFLWLVFLLAFGLKLVQSIDPRNGVSCRKGSDFAFNSTKIASFKDKNDEDDDDDETELYGEDEEFDVVAL RRLVKTERQRKRAAELEVEKERTAASSAANEAMAMILRLQNEKSSLEIEVNQYRRTAEQNKEYARQVIQSLQWMITKHESERRLLEEKLGICRLKLERHG IIGELDCDFGDMEVESLAATVIEATSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18265			Protein of unknown function, D...		Lus10035638 [exp]	0	1
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10018162 [exp]	2.0	0.9316
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10040191 [exp]	3.0	0.9327
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10025677 [exp]	4.9	0.9204
AT5G42760			Leucine carboxyl methyltransfe...		Lus10000713 [exp]	7.2	0.9140
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	7.4	0.9136
AT5G16720			Protein of unknown function, D...		Lus10010755 [exp]	9.2	0.9009
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10038093 [exp]	9.4	0.8944
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10025378 [exp]	9.9	0.9103
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10002166 [exp]	10.2	0.9005
AT3G61180			RING/U-box superfamily protein...		Lus10041359 [exp]	11.3	0.8834

Compare expression of checked genes

Lus10035638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.