Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64390 293 / 3e-87 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT1G51580 157 / 2e-40 RNA-binding KH domain-containing protein (.1) AT5G09560 149 / 1e-37 RNA-binding KH domain-containing protein (.1) AT5G15270 136 / 1e-33 RNA-binding KH domain-containing protein (.1.2) AT2G22600 136 / 2e-33 RNA-binding KH domain-containing protein (.1) AT5G53060 102 / 2e-22 RNA-binding KH domain-containing protein (.1.2) AT5G46190 96 / 3e-20 RNA-binding KH domain-containing protein (.1) AT1G14170 91 / 3e-19 RNA-binding KH domain-containing protein (.1.2.3) AT4G18375 74 / 1e-13 RNA-binding KH domain-containing protein (.1.2) AT2G03110 63 / 2e-11 RNA binding;nucleic acid binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010754 [exp] 1224 / 0 AT5G64390 311 / 5e-94 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10034831 [exp] 138 / 1e-33 AT1G51580 409 / 2e-134 RNA-binding KH domain-containing protein (.1) Lus10030689 [exp] 132 / 4e-32 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10007236 [exp] 129 / 1e-30 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10005232 [exp] 126 / 5e-30 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10028237 [exp] 123 / 8e-29 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10012725 [exp] 109 / 2e-24 AT2G22600 216 / 1e-61 RNA-binding KH domain-containing protein (.1) Lus10038509 [exp] 102 / 2e-22 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10005915 [exp] 97 / 1e-20 AT5G53060 599 / 0.0 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G042500 [exp] 610 / 0 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.007G116300 [exp] 509 / 4e-170 AT5G64390 225 / 2e-62 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.007G012000 [exp] 175 / 4e-47 AT2G22600 325 / 3e-104 RNA-binding KH domain-containing protein (.1) Potri.007G011900 [exp] 167 / 7e-43 AT2G22600 295 / 2e-87 RNA-binding KH domain-containing protein (.1) Potri.002G112200 [exp] 149 / 3e-37 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.010G251700 [exp] 148 / 3e-37 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.004G123400 [exp] 123 / 3e-29 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 115 / 9e-27 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.015G011100 [exp] 115 / 1e-26 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 111 / 4e-25 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10035640 pacid=23147361 polypeptide=Lus10035640 locus=Lus10035640.g ID=Lus10035640.BGIv1.0 annot-version=v1.0 ATGGACGCTAGCTATCTCTCTCTGCCTTCCAAACGAACCATTCATCACCCTGCCGGAGGAATGTGCGACCCCAACAAACGTTTCAAGCAATTCCCTCCTT CTCCCAATCAACATCATCATCATCTGTCAGTGCCTGCTGGACACGTTTGCTTCCGTCTCCTCTGTCACTCCTCCCGCGTCGGTGGTATCATCGGCAAGTC CGGCAGCATAGTGAAGCAGCTGGTGCAGCAGACCGGCGCTAAGATCCGTGTCGAGGAGGCTCCCGTTGACTGCCCCGATCGAGTTATCTCCGTACTCGCT CCCGCCGCAATCAGCTCAAGGATTTCATTGCCAGCAAGCAATGGCTTCGCCGATTGTGAATTCGATGTGTCTAGAGGTCAGGAAGCGCTGGTGAAGGTAT TGGAGAGGGTTTTAGAAGTTGCTGCTGAGACTGATGGTGGGAGTCTACCTGAAGGGAGGGTTGTGTCTTGTAGATTGCTGGCTGAGGGGACCCACGCGGG TTCTGTAATCGGTAAGGGAGGCAAGGTTGTGGAGAAGATTAAGAAGGATTTTGGTGTTAAAATCAGGGTTATGAAGGATAAGTTGCCTCTTTGTACTGCT CCAACGGAGGAGATTATTGAGATTGAAGGGGAAGTTATGGGAGTGAAGAGAGCATTAGTTTCAGTCTCTCGCTGTCTTCAAGATTCTCAACTATCTGATA GGACGAGAATGTCTGGCAGAAAACCTGTTGAGATGGTTCCGAGAGAGCCGCCTGACATGCGGCTGAATATTCTATCGCAGCACACCTCAATTCCAGGCTC TGTATCAACTTCAGGAGGTCATTCTTTGTCGCTGGAGTCTGACAGAAACCGTGATACTAGGACGTTACTGGAGGAAGTTGCTTTCAGAATTCTTTGTTCC AATGATATAGTTGGTGGTATTATTGGAAGTGGTGGAAGCATTATCAGGTCTCTTCAAGATGGGACAGGCGCTTCTATAGTTATTGGACCCTCTGTGCCTG ATTGCGATGAAAGATTAATCACCATTGCAGCATCAGAGAACCCAGAATCTCGGTACTCTGCTGCACAGAAAGCCACAGTCCTTGTTTTCTCAAGAGCCGT AGATGCTGGGATTGAGAAGGGGCTAGGAGGCTCCTTTAAGGGATCCCCTGTTACTGCTAGGATCGTAGTCTCATCAGCCAAAGTTGGTTGTTTGTTGGGG AAAGGAGGCACGATAGTTTCAGAAATGCGCAAGGATACTGGTGCTGGAATACGGGTATTAGGACATGACCAGCTGCCGAAGTGTGTGCAGGAGAATGATC AAGTGGTACAGATTTCAGGAGAATTGGTTAATGTAAGGGATGCAATATACCATGTTACTGGGAGACTCCGGGATAACCTGTTCTCTGGCTTGCTGAGTAG TTCTATGACAGGGAGCACAACTCTATCTACTGAGCCTAATCCCTATGGAAGTGTTAGGGATCTTCCAAGGATGTCTCTAAAGGAACCGTTGCGAGACTCA TCAAGGGAATCTTTCATTGAGTTGTATAGTTATCAGCCGGAGGACCCCTCAATGGAATCTTATGTGGACCGGTATCGGTATCCCTCCGGGGAGCCAGCGA GGGAATTATTCAACCAGCCGTTGAGGAATTCTTTAAGGGATCCTTTAAGGGACTCATTCACAGATCCTCTTGGGGATTCCTTGAGATACCCACTTAGGGA TACATTTAGAGATCCATTAAGAAATCCTCTGAGAGATCCTACTCTTTCCTCACATGTGTCAGTTGGTACTTCTCATATTTTAGGCCGACACTCTAATCTT GGATACAGCATAGACCATCTTGGACTTTCTCATGGTCGGGACGAATCCCAATCACCAAAGTCATGGACACACCAGATAACTGGGGCAAATACAAGAGGCT TCACTGATGTTAGCAGAGGATTATCTTCCTTCAAAGGTGGCCTTGAATCGGCCAGTTCCAGCAGGTCGGCAATTGTCACAAACACAACTGTTGAGATTGT GGTACCTGAAAGCGTTATCAGCTGTGTCTACGGGGAAAATGGGAATAATCTGGTTCGTTTGAGACAGATCTCAGGTGCCAAGGTTATAGTTCATGAACCT CGTGTAGGATCAAGTGACAGGATTATTGTAATATCTGGGACACCTGATGAAACTCAGGCAGCACAAAGCCTTCTTCAAGCATTTATCCTGACGGGACAAT CTTGA
AA sequence Show only first row Show all	>Lus10035640 pacid=23147361 polypeptide=Lus10035640 locus=Lus10035640.g ID=Lus10035640.BGIv1.0 annot-version=v1.0 MDASYLSLPSKRTIHHPAGGMCDPNKRFKQFPPSPNQHHHHLSVPAGHVCFRLLCHSSRVGGIIGKSGSIVKQLVQQTGAKIRVEEAPVDCPDRVISVLA PAAISSRISLPASNGFADCEFDVSRGQEALVKVLERVLEVAAETDGGSLPEGRVVSCRLLAEGTHAGSVIGKGGKVVEKIKKDFGVKIRVMKDKLPLCTA PTEEIIEIEGEVMGVKRALVSVSRCLQDSQLSDRTRMSGRKPVEMVPREPPDMRLNILSQHTSIPGSVSTSGGHSLSLESDRNRDTRTLLEEVAFRILCS NDIVGGIIGSGGSIIRSLQDGTGASIVIGPSVPDCDERLITIAASENPESRYSAAQKATVLVFSRAVDAGIEKGLGGSFKGSPVTARIVVSSAKVGCLLG KGGTIVSEMRKDTGAGIRVLGHDQLPKCVQENDQVVQISGELVNVRDAIYHVTGRLRDNLFSGLLSSSMTGSTTLSTEPNPYGSVRDLPRMSLKEPLRDS SRESFIELYSYQPEDPSMESYVDRYRYPSGEPARELFNQPLRNSLRDPLRDSFTDPLGDSLRYPLRDTFRDPLRNPLRDPTLSSHVSVGTSHILGRHSNL GYSIDHLGLSHGRDESQSPKSWTHQITGANTRGFTDVSRGLSSFKGGLESASSSRSAIVTNTTVEIVVPESVISCVYGENGNNLVRLRQISGAKVIVHEP RVGSSDRIIVISGTPDETQAAQSLLQAFILTGQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10035640 [exp]	0	1
AT5G66180			S-adenosyl-L-methionine-depend...		Lus10028444 [exp]	1.4	0.8753
AT3G46220			unknown protein		Lus10004920 [exp]	1.7	0.8599
AT4G03000			RING/U-box superfamily protein...		Lus10041246 [exp]	4.0	0.8073
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	4.0	0.8724
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10008553 [exp]	4.5	0.8006
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	6.0	0.8522
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10021351 [exp]	6.3	0.8268
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Lus10002652 [exp]	7.1	0.8509
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	8.1	0.8463
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	10.2	0.8377

Compare expression of checked genes

Lus10035640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.