Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09620 204 / 9e-63 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 193 / 4e-59 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G01190 133 / 6e-36 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT4G05150 107 / 7e-27 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G18230 99 / 6e-24 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G49920 92 / 3e-22 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G26510 87 / 5e-21 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT3G46920 89 / 2e-20 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G70640 84 / 3e-20 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1) AT1G04700 88 / 7e-20 PB1 domain-containing protein tyrosine kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010753 [exp] 194 / 2e-63 AT5G09620 182 / 5e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 188 / 3e-57 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007952 [exp] 122 / 7e-32 AT2G01190 444 / 1e-146 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002588 [exp] 108 / 2e-27 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10034643 [exp] 99 / 2e-24 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 99 / 4e-24 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10010752 [exp] 96 / 4e-23 AT5G64430 44 / 1e-04 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007965 [exp] 96 / 7e-23 AT2G01190 184 / 1e-51 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10013495 [exp] 91 / 9e-21 AT2G01190 176 / 1e-46 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G080200 [exp] 234 / 3e-75 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 224 / 5e-71 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.002G108800 [exp] 137 / 1e-38 AT5G09620 146 / 3e-39 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 129 / 2e-34 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G124700 [exp] 123 / 2e-32 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 117 / 8e-31 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 117 / 1e-30 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G053500 [exp] 112 / 2e-28 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G052000 [exp] 93 / 1e-21 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.003G006200 [exp] 90 / 2e-21 AT5G49920 188 / 3e-58 Octicosapeptide/Phox/Bem1p family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10035641 pacid=23147439 polypeptide=Lus10035641 locus=Lus10035641.g ID=Lus10035641.BGIv1.0 annot-version=v1.0 ATGGAAAGCTACTCCTACAACTCCTCCTACCCGGATTCAGGCCACTCCTCCCCTCGATCCCGCGAAATCGACTTCGAAAACCCTCCCCCATGGGAGGACC AGTCTTCCTCCTCCTCCCTGAACTCCGCCGCTGTCAGCAAGGTCAAGTTCATGTGCAGCTATGGCGGCAAGATCCACCCTCGCCCCCACGACAACCAACT CGCCTACATCGGCGGCGACACCAAGATTCTTTCCGTTGACCGCAGCATCAAGTTCTCCTCCCTCATCTCCAAGCTCTCCGCTCTCTCCGGCGACGGCGTC GACATGTCCTTCAAGTACCAGCTCCCCGGTGAGGATCTCGACGCCTTGATCTCCGTCACCAACGACGACGACCTCGAGCACATGATGCACGAGTACGATC GCCAGTCCCGCGCCTCCGCTAAGCCTGCAAGGATGCGCCTTTTCCTATTTCCGGCGAATCCGTCTCCGCCTGCCAGCTTCGGATCCGACGGCGGAAAGTC CGACGGATTCGTTGAGGCCTTCAATTCCGTTCCGGTCCAAGTGAATCCCAAAGCTGCTGCTGCTCCGGTGGGTCAAAATAATGCTGATTTCTTGTTTGGA TTGCAGAAAGGAGTAGGACTAGGAGTGTCTGCTCCCCGGATCAGCATAATCTAG
AA sequence Show only first row Show all	>Lus10035641 pacid=23147439 polypeptide=Lus10035641 locus=Lus10035641.g ID=Lus10035641.BGIv1.0 annot-version=v1.0 MESYSYNSSYPDSGHSSPRSREIDFENPPPWEDQSSSSSLNSAAVSKVKFMCSYGGKIHPRPHDNQLAYIGGDTKILSVDRSIKFSSLISKLSALSGDGV DMSFKYQLPGEDLDALISVTNDDDLEHMMHEYDRQSRASAKPARMRLFLFPANPSPPASFGSDGGKSDGFVEAFNSVPVQVNPKAAAAPVGQNNADFLFG LQKGVGLGVSAPRISII

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10035641 [exp]	0	1
					Lus10035642 [exp]	1.0	0.9458
AT3G11150			2-oxoglutarate (2OG) and Fe(II...		Lus10028972 [exp]	3.9	0.8937
AT5G50760			SAUR-like auxin-responsive pro...		Lus10011332 [exp]	5.3	0.9029
AT3G11780			MD-2-related lipid recognition...		Lus10013366 [exp]	7.7	0.8929
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10020019 [exp]	8.3	0.9027
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10029219 [exp]	9.5	0.8857
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10011064 [exp]	10.6	0.8873
AT3G11810			unknown protein		Lus10036797 [exp]	12.0	0.8802
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10004403 [exp]	12.1	0.8380
AT1G02305			Cysteine proteinases superfami...		Lus10010091 [exp]	14.4	0.8973

Compare expression of checked genes

Lus10035641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.