Plant FIBer expression Database

Lus10035642 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010752
[exp]
259 / 1e-85 AT5G64430 44 / 1e-04 Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G285800
[exp]
49 / 1e-06 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1)
Potri.009G080200
[exp]
41 / 0.0003 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1)
PFAM info
Representative CDS sequence
>Lus10035642 pacid=23147576 polypeptide=Lus10035642 locus=Lus10035642.g ID=Lus10035642.BGIv1.0 annot-version=v1.0
ATGGCTATGGCGACGCCCCGGACGGAGGCGGGAAATTGGATCGAAAAACATGTCGGCGGCGGGGGAGGACTGGGTTATGATCAGGATGTGGAGGTTTCTT
ACGAAGATCCAAACTCATATCGGCAACAGCAGAGAGCGGCACCCAATTCAGCTGATCTGGCGTCGTACACGATCGTCCCCTCACAACCTCAACAACAGCA
AAACGTGTATATGCAACCGGCTTTCAATGGTCAACCCGGTCAAGGGTACTACGTGCAGAGGATGGGCGGCGGCGGAGGAGGGGGACCGGAGATTTACCGG
GAACAACCGGTTTATAATATGTTGCCCATGTCACAGCCGCAACACCACGCACCGCCTCCGATGACGACGGCTCCCGGCGGAGGAGTACATCAGATGACGA
TGGTGAGTTCGGGGGTTACGATGACGGCGGATGGAGGGGCTAGGTACCACCAGCAGCCAGCAGGGACGACGATGGCGTACGATAGCCAGATGGGGAGGCA
GGTGTACTACCATGCGCAGGGGGGCACGGGGCATCACCCGCCGCAGGTGGTGGGTCCTCCTCCGGGGGTGGCTTTACAAGGTATGGTGTTTAGCGGTGGC
GATATGAGGAGCGCTGCCGCCGTGGCTATGCCGACGGAGGCGGCGGCTAAGATGGTGAGCAAAGTTCCACAGACGTCAGTTTGA
AA sequence
>Lus10035642 pacid=23147576 polypeptide=Lus10035642 locus=Lus10035642.g ID=Lus10035642.BGIv1.0 annot-version=v1.0
MAMATPRTEAGNWIEKHVGGGGGLGYDQDVEVSYEDPNSYRQQQRAAPNSADLASYTIVPSQPQQQQNVYMQPAFNGQPGQGYYVQRMGGGGGGGPEIYR
EQPVYNMLPMSQPQHHAPPPMTTAPGGGVHQMTMVSSGVTMTADGGARYHQQPAGTTMAYDSQMGRQVYYHAQGGTGHHPPQVVGPPPGVALQGMVFSGG
DMRSAAAVAMPTEAAAKMVSKVPQTSV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10035642
[exp]
0 1
AT5G09620 Octicosapeptide/Phox/Bem1p fam... Lus10035641
[exp]
1.0 0.9458
AT3G11780 MD-2-related lipid recognition... Lus10013366
[exp]
1.4 0.9299
AT3G11150 2-oxoglutarate (2OG) and Fe(II... Lus10028972
[exp]
2.4 0.9060
AT3G11810 unknown protein Lus10036797
[exp]
2.8 0.9155
AT4G14430 PEC12, IBR10, E... DELTA\(3\), DELTA\(2\)-ENOYL C... Lus10022199
[exp]
3.2 0.9151
AT2G42610 LSH10 LIGHT SENSITIVE HYPOCOTYLS 10,... Lus10029219
[exp]
4.6 0.9052
AT1G12440 A20/AN1-like zinc finger famil... Lus10028903
[exp]
6.2 0.9218
AT4G02080 ASAR1, ATSARA1C... secretion-associated RAS super... Lus10010926
[exp]
8.9 0.8925
AT1G45616 AtRLP6 receptor like protein 6 (.1) Lus10011064
[exp]
9.0 0.8936
AT3G48090 ATEDS1, EDS1 enhanced disease susceptibilit... Lus10036644
[exp]
10.7 0.8688

Lus10035642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.