Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04305 556 / 0 Magnesium transporter CorA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007098 [exp] 651 / 0 AT2G04305 645 / 0.0 Magnesium transporter CorA-like family protein (.1) Lus10020472 [exp] 643 / 0 AT2G04305 638 / 0.0 Magnesium transporter CorA-like family protein (.1) Lus10010751 [exp] 424 / 2e-149 AT2G04305 393 / 3e-137 Magnesium transporter CorA-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G285300 [exp] 566 / 0 AT2G04305 590 / 0.0 Magnesium transporter CorA-like family protein (.1) Potri.009G079600 [exp] 565 / 0 AT2G04305 587 / 0.0 Magnesium transporter CorA-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01544 [flax] [poplar] CorA CorA-like Mg2+ transporter protein
Representative CDS sequence Show only first row Show all	>Lus10035643 pacid=23147687 polypeptide=Lus10035643 locus=Lus10035643.g ID=Lus10035643.BGIv1.0 annot-version=v1.0 ATGAAAACTAAGAATCCTTCTACATTCTTCACTGTTTCATCCCTTCTCTCAATCACCTCCGTTCACAACTACTACAACAAAGAATGGGATTTAGCGGAAG GTTTCGGCCAGGAATTCTGCTGGTACCACGTCGAACTACCGCGAAGCAACCCGAAACTAACTTCCTCTGCACAATGGCTAATCGATCTCCTGTGTCCTCC GCTGAAGCTTCAAGACATTCTAGCGCTGGTTAGCAACGGACCCTTTTGCGGATACGTCGACGGGGTGCTCGTGTTTCGGGTGAATTCTCCGGGCCCTGCT TCGAGCAATTTTACTTTCCGTTTGGCGGCCAGAGTTACCGAAAACTCTGTTATCACCGTGTCGTTGGGGCACATTCCGCGGGTTGGATTCTCGCCGACTA GCCAGTCTCTGCTTTCGGAGATTCCGCTTGTGGAATCTCCGTATGGGAGGAAAAAGAGTGATGATGAAGAAGGTGGAACTGTGATTAAGGAACATGTTCT TGACTTTCTTTTGATGATGAACCATTCGGAGGAGGCGGATAATCCTGTTCCGAAGACGGTTTCGAATCTGGTTGTGCATATTCTTGATACTCATGTGGAT CACCTTCAGGATACTGTGACTAAGTTGGAGATGGAGTTGGAATCTATGGAGCTTGACCTGGATAAAGGCAGTTTTGCTCTGAAGAAACAAATGCTCGACG ACAGGAGGTTCCCGAAAATGCACCTCAACCTGCAGCGGTTGCTGCAAGTGATCGCACACGAGGAACAAGTAATCCCACGTGTGAAGGAAAAATGCTCGTG GAAAGAATGGTTCGCGAGCGAAGACATCAACGCCTTGGAAGAACTGGTCGGGAGTCTGAGGAGGCTGAAGGAAAACGTCCGGTTCATAGCGAACCGCGTG ACAGCGATTCAGGCAGGGCTCGACAGCTGGCAGTCCGAGCAGATCAACAGGAAGCTCTACTACATCTCGTTCCTTTCCATCGTCTTCCTTCCGTTGTCAA TCATCACCGGAGTGTTTGGCATGAATGTCGGAGGAGTTCCGTGGACGGGCCAGGATAAACCGGAGCTCAGATTCGGTTTCGAGAACGTGATGCTTCTGTG TTTGGGAATGCTGGTGCTGGTGCTGCTGTGTTTTCTGTTCCCGGCTACTTATACATGGTTTACCTCGTGGAGGAGAAGAGTTGCCATGAGTAGAGGATGG ACTATCAACAGGAGATCGTTTCTCAAGAGGATTAAAGCAAAAGAAGGTTACCTGCGCATTTGA
AA sequence Show only first row Show all	>Lus10035643 pacid=23147687 polypeptide=Lus10035643 locus=Lus10035643.g ID=Lus10035643.BGIv1.0 annot-version=v1.0 MKTKNPSTFFTVSSLLSITSVHNYYNKEWDLAEGFGQEFCWYHVELPRSNPKLTSSAQWLIDLLCPPLKLQDILALVSNGPFCGYVDGVLVFRVNSPGPA SSNFTFRLAARVTENSVITVSLGHIPRVGFSPTSQSLLSEIPLVESPYGRKKSDDEEGGTVIKEHVLDFLLMMNHSEEADNPVPKTVSNLVVHILDTHVD HLQDTVTKLEMELESMELDLDKGSFALKKQMLDDRRFPKMHLNLQRLLQVIAHEEQVIPRVKEKCSWKEWFASEDINALEELVGSLRRLKENVRFIANRV TAIQAGLDSWQSEQINRKLYYISFLSIVFLPLSIITGVFGMNVGGVPWTGQDKPELRFGFENVMLLCLGMLVLVLLCFLFPATYTWFTSWRRRVAMSRGW TINRRSFLKRIKAKEGYLRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04305			Magnesium transporter CorA-lik...		Lus10035643 [exp]	0	1
AT1G69630			F-box/RNI-like superfamily pro...		Lus10011410 [exp]	2.0	0.9808
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017345 [exp]	2.8	0.9782
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10043327 [exp]	3.5	0.9738
					Lus10025782 [exp]	4.5	0.9605
					Lus10038304 [exp]	5.5	0.8066
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Lus10011721 [exp]	8.4	0.9235
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	8.8	0.9027
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	9.5	0.9027
					Lus10003941 [exp]	10.2	0.9027
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	10.8	0.9027

Compare expression of checked genes

Lus10035643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.