Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64410 536 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT1G09930 478 / 5e-165 ATOPT2 oligopeptide transporter 2 (.1) AT4G10770 389 / 1e-129 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT4G27730 365 / 7e-121 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT4G16370 360 / 6e-119 ATOPT3 oligopeptide transporter (.1) AT5G53520 358 / 2e-118 ATOPT8 oligopeptide transporter 8 (.1) AT5G53510 348 / 3e-114 ATOPT9 oligopeptide transporter 9 (.1) AT4G26590 345 / 8e-113 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 339 / 1e-110 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006581 [exp] 392 / 8e-131 AT4G10770 1260 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10022372 [exp] 372 / 1e-123 AT4G27730 1094 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10028445 [exp] 368 / 5e-123 AT4G10770 920 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10007770 [exp] 369 / 2e-122 AT4G27730 936 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10041897 [exp] 368 / 3e-118 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10039075 [exp] 359 / 3e-118 AT4G16370 1304 / 0.0 oligopeptide transporter (.1) Lus10038784 [exp] 357 / 2e-117 AT4G16370 1302 / 0.0 oligopeptide transporter (.1) Lus10016632 [exp] 340 / 6e-112 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10042147 [exp] 342 / 1e-111 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G079500 [exp] 536 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.005G150400 [exp] 508 / 3e-176 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 467 / 6e-160 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.003G145500 [exp] 396 / 2e-132 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019700 [exp] 384 / 2e-128 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.012G019500 [exp] 374 / 2e-124 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.016G006500 [exp] 368 / 8e-122 AT4G16370 1305 / 0.0 oligopeptide transporter (.1) Potri.007G056900 [exp] 365 / 8e-121 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.006G006000 [exp] 363 / 8e-120 AT4G16370 1284 / 0.0 oligopeptide transporter (.1) Potri.016G004800 [exp] 358 / 5e-118 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10035644 pacid=23147385 polypeptide=Lus10035644 locus=Lus10035644.g ID=Lus10035644.BGIv1.0 annot-version=v1.0 ATGTTCTTCGCTCTAAGCTACGGGTTCGGATTCGCTACGATCGCATCCACACTCACCCACGTCGCGCTGTTCCACGGGAGGGAGATGTACGGCCAGTTTC GAGCGTCGTACAAGGATCAAGGCCACCAGAAGGAAGACATCCACACTAGGCTTATGAGGAAGTACGATGACATACCCGGTTGGTGGTTCTACTCGATGCT GGCAGTCACGGTGGCCGTGTCACTGGTGCTGTGCACGGTTATGAAATACGAGGTGCAAATGCCGTGGTGGGGGCTGATCTTCGGGGGCGCGATGGCGTTC GTGTTCACTCTGCCGATCAGCATTATCACGGCCACCACGAATCAGACTCCGGGGCTCAACATTATAACGGAGTATATGATGGGAGTTATACTCCCCGGGA AGCCGATTGCTAATGTCTGCTTCAAGACTTATGGATACATGAGCATGGCTCAGGCTGTCTCGTTTCTCAATGATTTTAAACTCAGCCACTACATGAAGAT CCCTCCAAGATCAATGTTCCTGGTCCAGTTGATAGGGACAATCCTCGCAGGGACGATCAATCTCACGGTAGCATGGTGGCTACTCAACTCGGTCGAGCAC ATATGCCAGTGCGAACTCCCCCCGTGGGGAGTCCATGGACGTGCCCCTCGGACCCCGTATTCTTCAACGTGTGCGATCGGACCGGTCCTAGTGTGGCTAC TCCACAGGGCATTCCCAAGACAAGGGTGGATCCCATTGATCAACCTTCCTGTGCTCTTCGGAGTGAGCAGGATGATCCCGCCGGCCACCGCAATCAACTT CAACAGCTGGATCATCGTAGCGGTGGTGTTCAACTTCTATGTGTTTAGGTACAAGAAGCAGTGGTGGAATAGGTACAACTATATACTGTCGGCGGCGATG GATGCAGGGGTGGCATTCATGGCGGTGGTGCTTTATTTTTCGGTGGGGATGGAGGAGAAGAGCTTGATTTGGTGGGGGAACAATGGGGAGCATTGTGAGT TGGCTACCTGCCCGACTGCTAGAGGGGTTGTTGTTGATGGCTGTCCTGTCTACTACTGA
AA sequence Show only first row Show all	>Lus10035644 pacid=23147385 polypeptide=Lus10035644 locus=Lus10035644.g ID=Lus10035644.BGIv1.0 annot-version=v1.0 MFFALSYGFGFATIASTLTHVALFHGREMYGQFRASYKDQGHQKEDIHTRLMRKYDDIPGWWFYSMLAVTVAVSLVLCTVMKYEVQMPWWGLIFGGAMAF VFTLPISIITATTNQTPGLNIITEYMMGVILPGKPIANVCFKTYGYMSMAQAVSFLNDFKLSHYMKIPPRSMFLVQLIGTILAGTINLTVAWWLLNSVEH ICQCELPPWGVHGRAPRTPYSSTCAIGPVLVWLLHRAFPRQGWIPLINLPVLFGVSRMIPPATAINFNSWIIVAVVFNFYVFRYKKQWWNRYNYILSAAM DAGVAFMAVVLYFSVGMEEKSLIWWGNNGEHCELATCPTARGVVVDGCPVYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64410		ATOPT4	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035644 [exp]	0	1
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10023106 [exp]	1.4	0.8967
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Lus10032941 [exp]	6.3	0.7621
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10039138 [exp]	6.3	0.8879
					Lus10012416 [exp]	7.5	0.8599
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10031206 [exp]	9.6	0.6955
					Lus10024825 [exp]	9.8	0.6841
					Lus10000351 [exp]	10.6	0.7658
					Lus10002886 [exp]	11.8	0.7658
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	13.0	0.7658
					Lus10014748 [exp]	14.0	0.7658

Compare expression of checked genes

Lus10035644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.