Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78590 375 / 9e-131 NADK3, ATNADK-3 ARABIDOPSIS THALIANA NADH KINASE 3, NAD(H) kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010749 [exp] 313 / 4e-108 AT1G78590 211 / 7e-68 ARABIDOPSIS THALIANA NADH KINASE 3, NAD(H) kinase 3 (.1) Lus10000204 [exp] 233 / 2e-77 AT1G78590 154 / 4e-47 ARABIDOPSIS THALIANA NADH KINASE 3, NAD(H) kinase 3 (.1) Lus10028677 [exp] 42 / 0.0006 AT1G21640 1112 / 0.0 NAD kinase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104400 [exp] 445 / 9e-159 AT1G78590 416 / 4e-147 ARABIDOPSIS THALIANA NADH KINASE 3, NAD(H) kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF01513 [flax] [poplar] NAD_kinase ATP-NAD kinase
Representative CDS sequence Show only first row Show all	>Lus10035645 pacid=23147480 polypeptide=Lus10035645 locus=Lus10035645.g ID=Lus10035645.BGIv1.0 annot-version=v1.0 ATGGCGCGGAGGAGGGTGCTACTCTTGTTGAAGCCCTTTGATATGTACCCAATTGGCCAACTCTACTCCCAGTCTCGCGCTACCGATCCTAAGATTTTGC AATTCCTAGATAATAGGCGGAAGGTCCATAGAGAAGCCGTTCACTTCTGTCAGAGCATTTTGCAGAAGAAGGCAGTTGATTGGGAACCGGTTGTACGAGC TAATTTGTGTCGGCCGATTCAAAATGTTGATTTTGTAATCACTGTTGGTGGTGATGGCACACTTTTGCAAGCAAGTCATTTCATGGATGACTCAATTCCA GTTCTTGGAGTGAACTCAGACCCCACTCAAGTTGAAGAGGTTGAGGAATTCATTGATGATTTTGATGCTAACAGGAGCACTGGCTATCTGTGTGCAGCAA CTATGAAGAGCTTTGAACAGGTTCTAGATGATATCCTAGAGAGTCGAAAACTACCTTCGGAGTTGCGCAGAATATCGTTAAGGGTAAACTCACAGCCATT GTCAACATTTGCCCTTAACGATGTATTGGTTGCCCACCCATGTCCAGCAACAGTATCTCGGTTCTCATTCAGGATTACGAAAGATGCAATATCACGTTCT CCATTAGTGCACTGCAGATCAAGCGGTCTTAGAGTATCAACTGCGGCAGGTTCAACGGCTGCAATGCTTTCGGCTGGTGGGTTTGCGATGCCGATCTTAT CACAGAACCTCCAGTATATGGTTCGAGAACCAATTTCGCCTGCAGCTTCGGTATCCAACTTGATGCAGGGTATAGTCAACCCAGATGAAGTGATGGAGAT CACTTGGTTTTCAGAGGAGGGGTTTTTATACGTTGACGGGTCGAATGTTGTGCGTAGTATTCATTATGGTGACAGGATTGACATGTCTTCTAGAGCCCCT AATTTGAAAGTCTTCTTGCCTGAGACGTTGCAGTCATGA
AA sequence Show only first row Show all	>Lus10035645 pacid=23147480 polypeptide=Lus10035645 locus=Lus10035645.g ID=Lus10035645.BGIv1.0 annot-version=v1.0 MARRRVLLLLKPFDMYPIGQLYSQSRATDPKILQFLDNRRKVHREAVHFCQSILQKKAVDWEPVVRANLCRPIQNVDFVITVGGDGTLLQASHFMDDSIP VLGVNSDPTQVEEVEEFIDDFDANRSTGYLCAATMKSFEQVLDDILESRKLPSELRRISLRVNSQPLSTFALNDVLVAHPCPATVSRFSFRITKDAISRS PLVHCRSSGLRVSTAAGSTAAMLSAGGFAMPILSQNLQYMVREPISPAASVSNLMQGIVNPDEVMEITWFSEEGFLYVDGSNVVRSIHYGDRIDMSSRAP NLKVFLPETLQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Lus10035645 [exp]	0	1
AT5G38890			Nucleic acid-binding, OB-fold-...		Lus10004763 [exp]	4.5	0.8177
AT5G19370			rhodanese-like domain-containi...		Lus10000413 [exp]	6.5	0.7783
					Lus10027571 [exp]	7.9	0.7450
AT4G14000			Putative methyltransferase fam...		Lus10008886 [exp]	8.4	0.7447
AT1G55205			unknown protein		Lus10023655 [exp]	11.0	0.7486
AT5G17680			disease resistance protein (TI...		Lus10005174 [exp]	15.5	0.7623
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10041349 [exp]	16.0	0.7741
AT1G11240			unknown protein		Lus10018438 [exp]	18.7	0.7675
AT5G66005			Expressed protein (.1.2.3)		Lus10035990 [exp]	25.8	0.7325
					Lus10019515 [exp]	27.1	0.7752

Compare expression of checked genes

Lus10035645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.