Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33680 722 / 0 AGD2 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G13810 526 / 0 EDTS5, ALD1 eds two suppressor 5, AGD2-like defense response protein 1 (.1) AT2G22250 72 / 2e-13 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT1G80360 63 / 2e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G77670 59 / 2e-09 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G53970 59 / 2e-09 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT4G23590 44 / 0.0002 Tyrosine transaminase family protein (.1) AT4G23600 44 / 0.0002 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010748 [exp] 878 / 0 AT4G33680 724 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10020959 [exp] 543 / 0 AT2G13810 587 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Lus10000205 [exp] 216 / 6e-69 AT4G33680 120 / 5e-33 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10023080 [exp] 82 / 2e-16 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10032388 [exp] 82 / 2e-16 AT2G22250 681 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10014710 [exp] 67 / 5e-12 AT1G77670 680 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10004089 [exp] 68 / 7e-12 AT1G77670 685 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10023117 [exp] 62 / 3e-10 AT1G80360 593 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10017703 [exp] 56 / 4e-08 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G082100 [exp] 734 / 0 AT4G33680 736 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G013200 [exp] 590 / 0 AT2G13810 644 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.005G115800 [exp] 585 / 0 AT2G13810 601 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.002G091500 [exp] 555 / 0 AT2G13810 581 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.005G079200 [exp] 74 / 6e-14 AT2G22250 649 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.007G088426 [exp] 70 / 1e-12 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.005G175400 [exp] 66 / 3e-11 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 63 / 2e-10 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G124100 [exp] 57 / 1e-08 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G177000 [exp] 54 / 8e-08 AT1G80360 573 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10035646 pacid=23147619 polypeptide=Lus10035646 locus=Lus10035646.g ID=Lus10035646.BGIv1.0 annot-version=v1.0 ATGGCTCTTCATCACCATCTCAACGCCTCCATCTCTTCCTCTTCCTCGCCTCTCCTTTCTCCAACTTCTGCATTCAATTCCTCCTCCGGGAATCGGACTG TTTCTCTTCGGCCTCGAAACTTTGGGATTTGCAGAAGCGTCGCCACTTCTCAACCAGATAAGACTGAGACCGCTTATAAAACGAATGTCTCTCGCAATGC CAACATGGGGAAGCTTCAAGCTGGTTACTTGTTCCCAGAGGTTGCTAGAAGAAGGAATGCCCACAAAGAGAAATACCCTGATGCTGAAGTGATAAGCCTT GGTATAGGAGACACTACGGAGCCCATTCCGGATGTGATTACTTCTGCGATGTCTAAGAAATCTCAAGCATTGTCTACTCGGGAAGGTTACAGTGGCTATG GGGCAGAACAAGGTGAAAAGCCACTGAGAGCTGCAATCCGTTCAACTTTCTATGCTGATCTTGGTATTGATGATGATGACATTTTCGTCTCTGATGGTGC CAAATGTGACATATCACGTCTTCAGGTTGTTTTTGGCTCCAAAGTCACCATGGCTGTGCAAGATCCATCATATCCAGCTTATGTGGACTCAAGTGTCATT ATGGGTCAGACTGGGCAATTCCAAACTAATGTTGAGAAGTATGCCAATATTGAATACATGAGATGCACTCCCGAGAATGGTTTCTTTCCTGATTTATCTA AGGTCACCCAAACAGACATCATATTTTTCTGTTCCCCAAACAACCCCACTGGTGCTGCTGCAACAAGGGAGCAACTGACTCAATTAGTACAGTTTGCAAA GAACAACGGGTCGATTATCGTCTACGACTCAGCATATGCAATGTATATGTCCGATGACAACCCCCGATCCATATTTGAAATTCCAGGAGCGAAAGAGGTA GCGATTGAGACTTCCTCCTTCAGCAAGTATGCAGGATTTACCGGAGTTCGGCTAGGCTGGACTGTAGTCCCCAAGCAGCTCCTTTTCTCGGATGGGTTTC CTGTTGCCCGGGATTTTAACCGAGTTGTCTGTACCTGCTTCAACGGTGCATCCACTGTTGCTCAAGCTGGTGGCTTGGCATGCCTATCACCAGAAGGCCT CAAGGCAATGCGCGAGGTGATTGGATTCTACAAAGAGAACACAGAGATCATAGTAGACACGTTTAACTCACTTGGCTTTGAAGTCTATGGAGGAAGGAAT GCTCCGTACGTATGGGTAAACTTCCCGGGGCGTAGTTCATGGGAAGTGTTTGGGGAGATATTGGAGAAGACCCATGTGGTAACTACACCTGGGAGTGGGT TTGGTCCTGGCGGTGAAGGGTTTGTCAGGGTGAGTGCCTTCGGTCACAGAGAAAATGTCTTGGAAGCCTGCAAGAGGTTCAAGCAGCTTTACAAGTGA
AA sequence Show only first row Show all	>Lus10035646 pacid=23147619 polypeptide=Lus10035646 locus=Lus10035646.g ID=Lus10035646.BGIv1.0 annot-version=v1.0 MALHHHLNASISSSSSPLLSPTSAFNSSSGNRTVSLRPRNFGICRSVATSQPDKTETAYKTNVSRNANMGKLQAGYLFPEVARRRNAHKEKYPDAEVISL GIGDTTEPIPDVITSAMSKKSQALSTREGYSGYGAEQGEKPLRAAIRSTFYADLGIDDDDIFVSDGAKCDISRLQVVFGSKVTMAVQDPSYPAYVDSSVI MGQTGQFQTNVEKYANIEYMRCTPENGFFPDLSKVTQTDIIFFCSPNNPTGAAATREQLTQLVQFAKNNGSIIVYDSAYAMYMSDDNPRSIFEIPGAKEV AIETSSFSKYAGFTGVRLGWTVVPKQLLFSDGFPVARDFNRVVCTCFNGASTVAQAGGLACLSPEGLKAMREVIGFYKENTEIIVDTFNSLGFEVYGGRN APYVWVNFPGRSSWEVFGEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENVLEACKRFKQLYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10035646 [exp]	0	1
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10039874 [exp]	1.4	0.9656
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10040433 [exp]	2.6	0.9543
AT4G24175			unknown protein		Lus10017264 [exp]	3.6	0.9415
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10039260 [exp]	5.3	0.9592
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10029196 [exp]	5.9	0.9278
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10042515 [exp]	8.7	0.9578
AT1G74050			Ribosomal protein L6 family pr...		Lus10039084 [exp]	8.7	0.9590
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10012463 [exp]	9.5	0.9574
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	12.7	0.9473
AT5G04520			Protein of unknown function DU...		Lus10028831 [exp]	14.3	0.9285

Compare expression of checked genes

Lus10035646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.