Plant FIBer expression Database

Lus10035649 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G14095 87 / 9e-21 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010746
[exp]
272 / 3e-92 AT2G14095 108 / 2e-28 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G310100
[exp]
99 / 4e-25 AT2G14095 109 / 1e-29 unknown protein
Potri.017G050000
[exp]
85 / 4e-20 AT2G14095 105 / 6e-28 unknown protein
Potri.002G101600
[exp]
44 / 2e-05 ND /
PFAM info
Representative CDS sequence
>Lus10035649 pacid=23147352 polypeptide=Lus10035649 locus=Lus10035649.g ID=Lus10035649.BGIv1.0 annot-version=v1.0
ATGTCTTCGGCAGCTGCCCGCGGCGGAGGAAGCAGCTCTGCCTCCTCAAATTACAACTTGAGAAACTTGGTGGATTTACTACGACGCTTTTACAACGGCA
GATCATCATCTTCAGCTCTTAGCTATTCCTGGAGGAGAAGCAACAATGTCGCATCGTCATCAGCAGCTGGTAGTAACTCATCATCAATGGTGGCTCATAA
CAATTACAAGCAGGCGCCTGCGGAAACGACAAAGCAGATCAGAGGATTACAGTTGATCAGCTGCAACAGCTTGCTGCTCAAGGGCCGCTTATTTTTGCAT
AATTCGGCTGTTGACAACAAGTCTTCCGCCGCCGCCGGCGCTCCACCATCGTCGGTAAAGTGGGCGTTGGGAGCCATCTTTACGATAGTCTTACCTTTCT
GGAAGCAAAGATGGGAAAGAATGAAAACAATTGAAAGGGAGGCAGAGATGGTGGCAGGTGAGATGGAAAAAGTGACGGAGGTAGTGGAGAAAGTGGCGAC
GGTAGCGGAGAATATGTCCGTCCAGCTGGCTGAAAATCTCCCGCCTACTAATGAAAAACTAAAGGAAACAGCTTTGGTTGCAGAGAGGATATTTAAAACA
ACTGCTCACGACGCTCATGTAGCCAGAGACTTCTTACATCAGGTTGATAAGTTGGCGCATGATTTTGATGACTTGGAGAAGATGGTGCATGCAACCCAAC
CCAAACCTTGCTCACCATAA
AA sequence
>Lus10035649 pacid=23147352 polypeptide=Lus10035649 locus=Lus10035649.g ID=Lus10035649.BGIv1.0 annot-version=v1.0
MSSAAARGGGSSSASSNYNLRNLVDLLRRFYNGRSSSSALSYSWRRSNNVASSSAAGSNSSSMVAHNNYKQAPAETTKQIRGLQLISCNSLLLKGRLFLH
NSAVDNKSSAAAGAPPSSVKWALGAIFTIVLPFWKQRWERMKTIEREAEMVAGEMEKVTEVVEKVATVAENMSVQLAENLPPTNEKLKETALVAERIFKT
TAHDAHVARDFLHQVDKLAHDFDDLEKMVHATQPKPCSP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G14095 unknown protein Lus10035649
[exp]
0 1
AT1G53210 sodium/calcium exchanger famil... Lus10033629
[exp]
1.0 0.9633
AT3G14250 RING/U-box superfamily protein... Lus10024093
[exp]
2.0 0.9628
AT1G11910 ATAPA1, APA1 aspartic proteinase A1 (.1) Lus10020024
[exp]
2.8 0.9542
AT2G04160 AIR3 AUXIN-INDUCED IN ROOT CULTURES... Lus10006505
[exp]
2.8 0.9397
AT5G50260 CEP1 cysteine endopeptidase 1, Cyst... Lus10042078
[exp]
3.5 0.9553
AT2G01300 unknown protein Lus10004062
[exp]
3.9 0.9446
AT5G54570 BGLU41 beta glucosidase 41 (.1) Lus10037988
[exp]
4.2 0.9442
AT2G46550 unknown protein Lus10012748
[exp]
6.7 0.9097
AT5G50260 CEP1 cysteine endopeptidase 1, Cyst... Lus10018083
[exp]
7.4 0.9322
AT5G18980 ARM repeat superfamily protein... Lus10034018
[exp]
7.7 0.9303

Lus10035649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.