Plant FIBer expression Database

Lus10035651 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17000 237 / 1e-69 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010744
[exp]
872 / 0 AT4G17000 245 / 8e-73 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G287800
[exp]
293 / 4e-90 AT4G17000 333 / 8e-104 unknown protein
Potri.009G081900
[exp]
283 / 8e-87 AT4G17000 314 / 3e-97 unknown protein
PFAM info
Representative CDS sequence
>Lus10035651 pacid=23147568 polypeptide=Lus10035651 locus=Lus10035651.g ID=Lus10035651.BGIv1.0 annot-version=v1.0
ATGGCGGACGAATCATTGTCACTTTCGTTTCTTTCTTCGCGGTCAGGTGAGTACCCGGAAGTAGAAGAGGAAGACTTCTACGAAAAAATCGAAGCGCCCA
AGTACACCGACCTCACTCAGCCGGATCCCCGCCGCTCCGGCGACGATCGCTACTGGTTCTGCCTCCGTGTCGGATGTGATCAAAAGCATGAAGAAGAAAT
GGACTCTGAAGCTATATACAAGAATTTCGTTCTTCGAGTCATGGCTGCTAGAAGTCCTAATGTCAGGCTTCGAAAAGCACTATGTAACAGAGACAAAAGC
AGCTCCAATCTGAGATGTCCACAGACAGTACCAGCAAAGCCTTCGAGACCGAGAATGGCAAGACTGGCATTGATCTCGTCAATATCTAAGAAACTAGTGG
TCGACAACAAGGCAGTGAAAGTGAAGAAGCCACTCACTACTAAACAGAATTCGACTCCAAGTGCAAAGGCAAAGCAACCTTCGACCACTCTAGGCAAATC
TCTTACGACTCCTAGGAACAGGAGACCTGCGTTCCAAGATCCGGCTGCATTCAGAAGTGTTCGGAATCCGAAGCCAACAACAGGACTAGGATTGCCAAAG
AAGAGGGAAGTGGCCAAGACTCTGGTGTTTGATTCCCCTAAGAAGCAAGCTAGAACGAAGACTCCACAGAATGAAATGGACAGTGTGAAGACTTTGTGTG
CAGGGATGAAGAAGCTTGAGATCACAGATGGAAAGAAGCAAGTGGTGAGGAGTAAAATGGTGCCGTTGGATTGTCCAAAGAAACAATTTAGGGGACGGGA
GGTTAAAAGCCGGGTTTATGATGGACTGCATACTCCAATCAAAGTATGTAAGCAAACCGGAGGATCTTCCAAGTGCTTGGAGGAGGAGAAGAACAAGGTA
AGAAGCACCCCACAGCAGAACTCTGGTCCTGCACCTTCCCACATGGAGATTGAAGAGAAATGCAACAACGGCCCTCAAGTTGAAGTCACGATGAGGGAGA
ACGAGAAAGAAACTAAATTGGCTGAAAACCAATGTGAAGCAGTAGAGGGCGACGATAAAGAAAACGATTCAGTCTCTGATGAGAATAGACCTGCACAACA
TAATGATGGTCACCTGGAGAAGAATATTCAAAGCTATCAGGACAATTTGAAGGGCACAAAGACATCAAGAACAATGCGTAAGCCATTTAAGGAGAGTTCT
GTAGCTCTTCCTGGAACTGTACCAGCTCAAAGTTTGAAGCTTCTAAAACCGAAACCTACGCATCCCAAGCCATTTCGGTTGAGAACTGATGAAAGGGGAA
TTCTAAAAGAAGCAAATATTGAGAAGAAGCTCCTCCATCTTACACCAGTTAAAGATAATGCAACAAGGTTCCCAAGAGCAAATCCGCAGAAGGGACATCA
ACAGAAAATTGAAATTGATGAAACAAACGGGTCACAGGGAGAACAACAGGAAGCTTCTAGCTTGAGGACTTCAAAGAGGAGAGGGATTCCAACTCCAAAT
AAACACACAGTATCTTCGCAGAAGAAAGGCGTTTCACGGCGAATGAACACTCCAAGCAGCAAAGCGGCAGCCCAGAAGACCAAGACAGCTCTGAAGAAAG
CTAAACCATCAGTGGCTGCAGCATGTACAAAAAGAATGGAGGTGATGGGTCAGCACTCAGTACAATGA
AA sequence
>Lus10035651 pacid=23147568 polypeptide=Lus10035651 locus=Lus10035651.g ID=Lus10035651.BGIv1.0 annot-version=v1.0
MADESLSLSFLSSRSGEYPEVEEEDFYEKIEAPKYTDLTQPDPRRSGDDRYWFCLRVGCDQKHEEEMDSEAIYKNFVLRVMAARSPNVRLRKALCNRDKS
SSNLRCPQTVPAKPSRPRMARLALISSISKKLVVDNKAVKVKKPLTTKQNSTPSAKAKQPSTTLGKSLTTPRNRRPAFQDPAAFRSVRNPKPTTGLGLPK
KREVAKTLVFDSPKKQARTKTPQNEMDSVKTLCAGMKKLEITDGKKQVVRSKMVPLDCPKKQFRGREVKSRVYDGLHTPIKVCKQTGGSSKCLEEEKNKV
RSTPQQNSGPAPSHMEIEEKCNNGPQVEVTMRENEKETKLAENQCEAVEGDDKENDSVSDENRPAQHNDGHLEKNIQSYQDNLKGTKTSRTMRKPFKESS
VALPGTVPAQSLKLLKPKPTHPKPFRLRTDERGILKEANIEKKLLHLTPVKDNATRFPRANPQKGHQQKIEIDETNGSQGEQQEASSLRTSKRRGIPTPN
KHTVSSQKKGVSRRMNTPSSKAAAQKTKTALKKAKPSVAAACTKRMEVMGQHSVQ

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G17000 unknown protein Lus10035651
[exp]
0 1
AT1G03780 AtTPX2, TPX2 targeting protein for XKLP2 (.... Lus10033674
[exp]
1.0 0.9897
AT3G10310 P-loop nucleoside triphosphate... Lus10035442
[exp]
3.0 0.9618
AT1G03780 AtTPX2, TPX2 targeting protein for XKLP2 (.... Lus10017715
[exp]
4.2 0.9746
AT3G51280 Tetratricopeptide repeat (TPR)... Lus10028434
[exp]
5.2 0.9713
AT3G07610 IBM1 increase in bonsai methylation... Lus10027890
[exp]
5.7 0.9607
AT2G04660 APC2 anaphase-promoting complex/cyc... Lus10026619
[exp]
6.0 0.9558
AT4G02800 unknown protein Lus10014668
[exp]
6.9 0.9710
AT5G25590 Protein of unknown function (D... Lus10037902
[exp]
7.5 0.9510
AT2G19520 ATMSI4, ACG1, N... MULTICOPY SUPPRESSOR OF IRA1 4... Lus10011936
[exp]
8.1 0.9534
AT4G02800 unknown protein Lus10000658
[exp]
8.1 0.9685

Lus10035651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.