Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09650 442 / 4e-158 ATPPA6 pyrophosphorylase 6 (.1) AT1G01050 84 / 4e-19 ATPPA1 pyrophosphorylase 1 (.1) AT4G01480 82 / 3e-18 ATPPA5 pyrophosphorylase 5 (.1) AT3G53620 78 / 6e-17 ATPPA4 pyrophosphorylase 4 (.1) AT2G46860 77 / 1e-16 ATPPA3 pyrophosphorylase 3 (.1) AT2G18230 73 / 3e-15 ATPPA2 pyrophosphorylase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037239 [exp] 565 / 0 AT5G09650 446 / 1e-159 pyrophosphorylase 6 (.1) Lus10024422 [exp] 82 / 3e-18 AT3G53620 385 / 3e-138 pyrophosphorylase 4 (.1) Lus10025311 [exp] 83 / 8e-18 AT3G53620 387 / 1e-136 pyrophosphorylase 4 (.1) Lus10030179 [exp] 77 / 2e-16 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10005139 [exp] 77 / 2e-16 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10028320 [exp] 76 / 3e-16 AT2G46860 360 / 4e-128 pyrophosphorylase 3 (.1) Lus10041767 [exp] 75 / 7e-16 AT2G46860 359 / 5e-128 pyrophosphorylase 3 (.1) Lus10025999 [exp] 75 / 8e-16 AT1G01050 357 / 5e-127 pyrophosphorylase 1 (.1) Lus10014292 [exp] 75 / 9e-16 AT1G01050 356 / 1e-126 pyrophosphorylase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081200 [exp] 462 / 5e-166 AT5G09650 450 / 4e-161 pyrophosphorylase 6 (.1) Potri.001G286900 [exp] 454 / 9e-163 AT5G09650 451 / 2e-161 pyrophosphorylase 6 (.1) Potri.007G022700 [exp] 81 / 5e-18 AT1G01050 353 / 2e-125 pyrophosphorylase 1 (.1) Potri.002G181300 [exp] 80 / 2e-17 AT1G01050 399 / 7e-144 pyrophosphorylase 1 (.1) Potri.014G107100 [exp] 79 / 2e-17 AT1G01050 404 / 1e-145 pyrophosphorylase 1 (.1) Potri.006G082500 [exp] 79 / 2e-17 AT3G53620 392 / 8e-141 pyrophosphorylase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00719 [flax] [poplar] Pyrophosphatase Inorganic pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10035653 pacid=23147336 polypeptide=Lus10035653 locus=Lus10035653.g ID=Lus10035653.BGIv1.0 annot-version=v1.0 ATGGCGACGGCGGTAAGAGCACTGGCGGCTGCGGCCAACACTGCCACCCCAGCTTCTTGCTTACGGCCATTCGCTTACAAATCAAGGCAGAGCCTTCGTT TCAGCAAGAAACACTTGCCCTTTTCGTTGGCGAAGAGGTCGTTCAGCTGTAAGGCCATATACAATCCAGGCGATCTCCAGATCAAACATGAAGGCCAGCC CGAATCCCTTGATTATCGCGTCTTCTTTCTCGACGGTTCTGGGAGAAAGGTTTCTCCTTGGCACGACATACCGTTGCACTTGGGTGATGGTGTGTTCAAT TTCATTGTTGAAATCCCCAAAGAATCAAGTGCTAAAATGGAGGTTGCAACCGATGAGCCATTCACTCCAATCAAGCAGGACACGAAAAAGGGGAAATTAA GATACTACCCATATAACATAAACTGGAACTATGGGCTGCTTCCGCAAACATGGGAAGACCCAACATTCGCAAACTCTGATGTTGAAGGAGCACTAGGAGA CAATGATCCTGTTGATGTTGTCGAAATTGGTGATAGCCAAAGAAAGGTTGGTGAAATATTGAAAGTGAAGCCCCTAGGTGCTTTGGCCATGATTGATGAG GGTGAACTTGACTGGAAAATCGTGGCAATTTCAATGGACGATCCTCGGGCTTCTCTTGTAAACGATGTTGATGATGTTGAGAAACATTTTCCTGGTACGC TGACTGCAATCAGAGACTGGTTCAGAGACTACAAGATCCCCGACGGCAAGCCTGCAAACAGGTTTGGCCTTGACAATAAGGCCGCAAATAAGGAATATGC TCTTAAGGTGATCCAGGAAACAAATGAATCATGGTCAAAGCTTATCAAAAGATCAATTCCTGCTGGAGAGCTTTCACTTGCATAG
AA sequence Show only first row Show all	>Lus10035653 pacid=23147336 polypeptide=Lus10035653 locus=Lus10035653.g ID=Lus10035653.BGIv1.0 annot-version=v1.0 MATAVRALAAAANTATPASCLRPFAYKSRQSLRFSKKHLPFSLAKRSFSCKAIYNPGDLQIKHEGQPESLDYRVFFLDGSGRKVSPWHDIPLHLGDGVFN FIVEIPKESSAKMEVATDEPFTPIKQDTKKGKLRYYPYNINWNYGLLPQTWEDPTFANSDVEGALGDNDPVDVVEIGDSQRKVGEILKVKPLGALAMIDE GELDWKIVAISMDDPRASLVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANRFGLDNKAANKEYALKVIQETNESWSKLIKRSIPAGELSLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09650		ATPPA6	pyrophosphorylase 6 (.1)		Lus10035653 [exp]	0	1
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10012974 [exp]	3.7	0.7555
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10009119 [exp]	4.2	0.7327
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10012008 [exp]	8.7	0.7245
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022220 [exp]	8.7	0.7206
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10010720 [exp]	20.3	0.6927
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10039044 [exp]	20.9	0.7312
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10035831 [exp]	22.8	0.7106
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10003220 [exp]	25.6	0.6633
AT5G62620			Galactosyltransferase family p...		Lus10036686 [exp]	25.9	0.6760
AT1G78560			Sodium Bile acid symporter fam...		Lus10035803 [exp]	26.2	0.6717

Compare expression of checked genes

Lus10035653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.