Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14620 425 / 3e-151 XTH10, XTR14 xyloglucan endotransglucosylase/hydrolase 10 (.1) AT5G65730 289 / 1e-97 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT5G57550 285 / 5e-96 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT4G37800 282 / 6e-95 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT5G57530 275 / 3e-92 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT3G23730 270 / 4e-90 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT5G13870 268 / 3e-89 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT5G57560 266 / 5e-89 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT5G57540 266 / 7e-89 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT4G25810 266 / 1e-88 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011597 [exp] 289 / 1e-97 AT5G65730 469 / 7e-169 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10039643 [exp] 289 / 2e-97 AT5G65730 469 / 1e-168 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10010938 [exp] 280 / 2e-94 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10020773 [exp] 279 / 7e-94 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010939 [exp] 279 / 8e-94 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10037240 [exp] 276 / 8e-94 AT2G14620 236 / 4e-78 xyloglucan endotransglucosylase/hydrolase 10 (.1) Lus10031393 [exp] 278 / 1e-93 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 276 / 7e-93 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010936 [exp] 276 / 1e-92 AT3G23730 382 / 2e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G083800 [exp] 461 / 2e-165 AT2G14620 454 / 1e-162 xyloglucan endotransglucosylase/hydrolase 10 (.1) Potri.007G008500 [exp] 291 / 3e-98 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1) Potri.002G060400 [exp] 282 / 5e-95 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.011G077320 [exp] 281 / 1e-94 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G060500 [exp] 280 / 3e-94 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.014G146100 [exp] 277 / 3e-93 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.018G095100 [exp] 277 / 4e-93 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.013G005700 [exp] 278 / 6e-93 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.003G159700 [exp] 277 / 7e-93 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.005G201250 [exp] 275 / 2e-92 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10035654 pacid=23147424 polypeptide=Lus10035654 locus=Lus10035654.g ID=Lus10035654.BGIv1.0 annot-version=v1.0 ATGCCCAGAAACCTCAAACTTTCGTCAGCTCTCCTTATTCTATCATGTCTGCTCGAGATTTCCTCAGGATCCATCGTATCGACTGGGAATTTCAACAAGG ATTTCCATGTCACTTGGTCTCCCTCCCACGTTAACACATCTGCTGATGGTTCTACAAGAACCTTGAAGCTTGATCAACAGTCCGGTGGTTCTGGCTTTGC TTCGAACCAGATGTTCTTGTTTGGGCAGATTGACATGCAAATCAAATTAATCCCCGGTTATTCTGCTGGCACTGTTGTTGCTTTCTATTTGGCATCCGAC GACAAGGCAAACCGTGATGAGATAGATTTCGAGTTCATGGGTAACGTAAGCGGGCAACCTTACATTCTTCAAACTAACATCTTTGCTGATGGGATGGATG ATCGCGAAGAAAGAATCTATCTCTGGTTCGATCCCACAAAAGACTTCCACACTTACTCTGTTCTATGGAACCTTCACCAAATTGTGTTCATGGTGGACTC TATTCCAATAAGAACATACAGAAACCATGCAGAGAAAGGGGTGGCATACCCAACGTTGCAGCCAATGAGCCTCAAGGCGAGCCTATGGAACGGCGACAGC TGGGCGACACGCGGTGGCAAAGACAAAATCGACTGGTCAAAGGCACCCTTTGTAGCTTCATTCAGGAATTACAAGATTGATGCATGTGTTTGGAATGCAG GGAAGAACCCTAGCTCTTGTAGGGAAGCAAGTAACTGGTGGAACAAACCAGAGTTGAGCTCATTAACATCGATGCAGAGGAGGTGGTTCAAATGGGTTAG GCTGCATCACATGATATATGATTACTGTACAGATAACAAGAGATTCAATAACAGTTTCCCAAAAGAATGCTCCCTCCCCAAGTATTAA
AA sequence Show only first row Show all	>Lus10035654 pacid=23147424 polypeptide=Lus10035654 locus=Lus10035654.g ID=Lus10035654.BGIv1.0 annot-version=v1.0 MPRNLKLSSALLILSCLLEISSGSIVSTGNFNKDFHVTWSPSHVNTSADGSTRTLKLDQQSGGSGFASNQMFLFGQIDMQIKLIPGYSAGTVVAFYLASD DKANRDEIDFEFMGNVSGQPYILQTNIFADGMDDREERIYLWFDPTKDFHTYSVLWNLHQIVFMVDSIPIRTYRNHAEKGVAYPTLQPMSLKASLWNGDS WATRGGKDKIDWSKAPFVASFRNYKIDACVWNAGKNPSSCREASNWWNKPELSSLTSMQRRWFKWVRLHHMIYDYCTDNKRFNNSFPKECSLPKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14620		XTH10, XTR14	xyloglucan endotransglucosylas...		Lus10035654 [exp]	0	1
AT1G75720			Plant protein of unknown funct...		Lus10036971 [exp]	2.0	0.9573
AT1G13920			Remorin family protein (.1)		Lus10026649 [exp]	2.0	0.9670
AT4G16400			unknown protein		Lus10039068 [exp]	2.6	0.9547
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009316 [exp]	5.7	0.9605
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10043075 [exp]	5.9	0.9558
AT1G68180			RING/U-box superfamily protein...		Lus10001611 [exp]	6.6	0.9361
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10028938 [exp]	6.9	0.9478
AT1G13920			Remorin family protein (.1)		Lus10004665 [exp]	6.9	0.9588
AT5G41470			Nuclear transport factor 2 (NT...		Lus10032294 [exp]	9.2	0.9445
AT1G75260			oxidoreductases, acting on NAD...		Lus10033210 [exp]	9.8	0.9550

Compare expression of checked genes

Lus10035654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.