Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58590 260 / 4e-88 RANBP1 RAN binding protein 1 (.1) AT2G30060 255 / 2e-86 Pleckstrin homology (PH) domain superfamily protein (.1) AT1G07140 253 / 2e-85 SIRANBP Pleckstrin homology (PH) domain superfamily protein (.1) AT1G52380 45 / 2e-05 NUP50 (Nucleoporin 50 kDa) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037241 [exp] 371 / 6e-132 AT5G58590 264 / 4e-90 RAN binding protein 1 (.1) Lus10035656 [exp] 339 / 2e-119 AT5G58590 270 / 3e-92 RAN binding protein 1 (.1) Lus10037242 [exp] 337 / 3e-118 AT5G58590 269 / 6e-92 RAN binding protein 1 (.1) Lus10037931 [exp] 49 / 2e-06 AT3G15970 343 / 7e-114 NUP50 (Nucleoporin 50 kDa) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G102400 [exp] 274 / 1e-93 AT5G58590 260 / 2e-88 RAN binding protein 1 (.1) Potri.009G073400 [exp] 273 / 1e-93 AT5G58590 267 / 3e-91 RAN binding protein 1 (.1) Potri.001G278900 [exp] 268 / 1e-91 AT5G58590 263 / 6e-90 RAN binding protein 1 (.1) Potri.016G119800 [exp] 267 / 1e-90 AT5G58590 265 / 2e-90 RAN binding protein 1 (.1) Potri.003G056400 [exp] 42 / 0.0002 AT1G52380 225 / 7e-68 NUP50 (Nucleoporin 50 kDa) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF00638 [flax] [poplar] Ran_BP1 RanBP1 domain
Representative CDS sequence Show only first row Show all	>Lus10035655 pacid=23147539 polypeptide=Lus10035655 locus=Lus10035655.g ID=Lus10035655.BGIv1.0 annot-version=v1.0 ATGTCTACTCCTCCTCCTACCTCAACCGCCGTCGTTCCCGAGCACAACAATAAAACCGCCGTCGTTCCCGAGCACAACAAGAAAGAGCGAGAGGACGAAG AAGAGAATTCACCTGCCGCTGATGATGAAGACACCGGAGCTCAGGTCGCTCCTATCGTCAAGCTGGAAGAGATCGCCGTAACTACTGGCGAGGAGGATGA AGATCCTATTCTCGATCTGAAATCGAAGCTGTATCGGTTTGACAAGGACGGGAGCCAGTGGAAAGAGAGGGGCACCGGAACCGTAAAGCTTTTGAAGCAT AAGAATAGCGGCAAAGTCCGCCTTGTCTTCCGCCAAGCTAGGACACTCAAGATCTGTGCTAATCATTTAGTTATTTCGGGAACAAAAGTGCAAGAGCATC CTGGCAATGAGAAGTCGTGTATTTGGCATGCTACTGACTTCGCTGATGAGGAGTTGAAGGATGAACTCTTCTGCATCAGATTTGCTTCTGTCGAGAACGC CAAAACTTTCATGGAGACTGTGCAGGAGGTGGCTGAGAGCCAGAGCAAGGAAGAAAGTAAAGATGCTGAAGACACTGCCAAACTTATTGACAGGTTGAGC GTTAAAGATAAGGGTGAAATTGTCAAGGAAACCAGTTGCGATGCTTCTGATGTTGACGAGAAGGAAAAGCCAGAGACGGTAAAGAAGAGCGAACCATCTC CGTTGTCTTGA
AA sequence Show only first row Show all	>Lus10035655 pacid=23147539 polypeptide=Lus10035655 locus=Lus10035655.g ID=Lus10035655.BGIv1.0 annot-version=v1.0 MSTPPPTSTAVVPEHNNKTAVVPEHNKKEREDEEENSPAADDEDTGAQVAPIVKLEEIAVTTGEEDEDPILDLKSKLYRFDKDGSQWKERGTGTVKLLKH KNSGKVRLVFRQARTLKICANHLVISGTKVQEHPGNEKSCIWHATDFADEELKDELFCIRFASVENAKTFMETVQEVAESQSKEESKDAEDTAKLIDRLS VKDKGEIVKETSCDASDVDEKEKPETVKKSEPSPLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10035655 [exp]	0	1
AT3G57280			Transmembrane proteins 14C (.1...		Lus10031047 [exp]	2.6	0.8754
AT1G13750			Purple acid phosphatases super...		Lus10037079 [exp]	2.8	0.8859
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10010594 [exp]	4.5	0.9017
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10008922 [exp]	5.0	0.8790
AT3G44150			unknown protein		Lus10029366 [exp]	5.9	0.9021
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030820 [exp]	8.3	0.8919
AT2G25760			Protein kinase family protein ...		Lus10005479 [exp]	11.0	0.8526
AT1G80230			Rubredoxin-like superfamily pr...		Lus10011494 [exp]	11.0	0.8455
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10007274 [exp]	15.0	0.8751
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Lus10013373 [exp]	15.2	0.8566

Compare expression of checked genes

Lus10035655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.