Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58590 262 / 3e-89 RANBP1 RAN binding protein 1 (.1) AT1G07140 257 / 3e-87 SIRANBP Pleckstrin homology (PH) domain superfamily protein (.1) AT2G30060 253 / 9e-86 Pleckstrin homology (PH) domain superfamily protein (.1) AT1G52380 45 / 1e-05 NUP50 (Nucleoporin 50 kDa) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037242 [exp] 368 / 5e-131 AT5G58590 269 / 6e-92 RAN binding protein 1 (.1) Lus10037241 [exp] 338 / 3e-119 AT5G58590 264 / 4e-90 RAN binding protein 1 (.1) Lus10035655 [exp] 336 / 3e-118 AT5G58590 267 / 4e-91 RAN binding protein 1 (.1) Lus10037931 [exp] 50 / 5e-07 AT3G15970 343 / 7e-114 NUP50 (Nucleoporin 50 kDa) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G073400 [exp] 273 / 7e-94 AT5G58590 267 / 3e-91 RAN binding protein 1 (.1) Potri.006G102400 [exp] 273 / 3e-93 AT5G58590 260 / 2e-88 RAN binding protein 1 (.1) Potri.001G278900 [exp] 268 / 1e-91 AT5G58590 263 / 6e-90 RAN binding protein 1 (.1) Potri.016G119800 [exp] 266 / 1e-90 AT5G58590 265 / 2e-90 RAN binding protein 1 (.1) Potri.003G056400 [exp] 40 / 0.0007 AT1G52380 225 / 7e-68 NUP50 (Nucleoporin 50 kDa) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF00638 [flax] [poplar] Ran_BP1 RanBP1 domain
Representative CDS sequence Show only first row Show all	>Lus10035656 pacid=23147570 polypeptide=Lus10035656 locus=Lus10035656.g ID=Lus10035656.BGIv1.0 annot-version=v1.0 ATGGCTACTCCTGCTCCCTCAGCCGATGTTCCCGAGCACAACAAAAAGGAGCGGGAGGACGAAGAAGAAACTTCACCTGCCGCCGACGATGAAGACACTG GAGCCCAGGTCGCTCCCATTGTGAAGCTCGAAGAGGTTGCCGTAACCACCGGCGAGGAGGATGAAGACCCTCTTCTCGATCTGAAATCGAAGCTGTATCG GTTCGATAAGGACGGGAGCCAGTGGAAAGAGAGAGGCACCGGAACCGTAAAGCTTCTGAAGCATAAGAATACCGGCAAGGTCCGCCTTGTCTTTCGCCAA GCTAGGACACTCAAGATCTGCGCTAATCATTTAGTTATTTCGGGAACAAAGGTGCAAGAGCATCCTGGCAACGAGAAGTCGTGTATTTGGCATGCTACTG ACTTCGCTGATGAGGAGTTGAAGGACGAGCTCTTCTGCATCAGATTTGCTTCCATCGAGAACGCCAAAACTTTCATGGAGACTGTTCAGGAGGTGGCTGA GAGTCAGAGCAAGGAAGAAAGTAAAGATGCTGCAGAGACTGCCAAACTTCTTGACAAGTTGAGTGTTGAAGATGCTGCCAAGGAAACCAGTGGTGATGCA GCTGCCGATGAGAAGAAGGAAAAGGCAGAGACTGAGAAGAAGGATGAACCAGCTTCATCAGCTTGA
AA sequence Show only first row Show all	>Lus10035656 pacid=23147570 polypeptide=Lus10035656 locus=Lus10035656.g ID=Lus10035656.BGIv1.0 annot-version=v1.0 MATPAPSADVPEHNKKEREDEEETSPAADDEDTGAQVAPIVKLEEVAVTTGEEDEDPLLDLKSKLYRFDKDGSQWKERGTGTVKLLKHKNTGKVRLVFRQ ARTLKICANHLVISGTKVQEHPGNEKSCIWHATDFADEELKDELFCIRFASIENAKTFMETVQEVAESQSKEESKDAAETAKLLDKLSVEDAAKETSGDA AADEKKEKAETEKKDEPASSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10035656 [exp]	0	1
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037242 [exp]	1.0	0.9357
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10006783 [exp]	4.5	0.8165
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10022036 [exp]	6.6	0.8311
AT3G18060			transducin family protein / WD...		Lus10038960 [exp]	8.1	0.8204
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10028921 [exp]	9.8	0.7805
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Lus10011213 [exp]	16.0	0.8046
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Lus10021604 [exp]	23.0	0.7618
AT5G14790			ARM repeat superfamily protein...		Lus10014533 [exp]	23.5	0.7636
AT4G24330			Protein of unknown function (D...		Lus10019957 [exp]	25.3	0.7734
AT5G52180			unknown protein		Lus10015101 [exp]	33.5	0.7793

Compare expression of checked genes

Lus10035656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.