Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33760 687 / 0 tRNA synthetase class II (D, K and N) family protein (.1) AT4G26870 55 / 1e-07 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT3G13490 53 / 4e-07 ATKRS-2, OVA5 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) AT4G31180 47 / 3e-05 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT4G17300 47 / 4e-05 ATNS1, NS1, OVA8 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT3G11710 45 / 0.0001 ATKRS-1 lysyl-tRNA synthetase 1 (.1) AT5G56680 45 / 0.0001 SYNC1ARATH, SYNC1, EMB2755 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G70980 44 / 0.0003 SYNC3, SYNC1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037243 [exp] 950 / 0 AT4G33760 1033 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Lus10018862 [exp] 54 / 2e-07 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028555 [exp] 53 / 6e-07 AT4G31180 606 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10013408 [exp] 51 / 2e-06 AT3G13490 881 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Lus10010317 [exp] 51 / 2e-06 AT3G13490 827 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Lus10028557 [exp] 46 / 9e-06 AT4G31180 235 / 8e-76 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10001625 [exp] 47 / 3e-05 AT3G11710 900 / 0.0 lysyl-tRNA synthetase 1 (.1) Lus10001440 [exp] 47 / 4e-05 AT3G11710 912 / 0.0 lysyl-tRNA synthetase 1 (.1) Lus10007470 [exp] 44 / 0.0003 AT4G17300 873 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G084300 [exp] 721 / 0 AT4G33760 1004 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Potri.001G289001 [exp] 716 / 0 AT4G33760 998 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Potri.003G221600 [exp] 53 / 6e-07 AT3G13490 897 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Potri.006G085400 [exp] 50 / 4e-06 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Potri.018G090400 [exp] 47 / 4e-05 AT3G11710 946 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.018G090600 [exp] 47 / 4e-05 AT3G11710 937 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.006G166000 [exp] 46 / 8e-05 AT3G11710 936 / 0.0 lysyl-tRNA synthetase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0250 [flax] [poplar] GAD PF02938 [flax] [poplar] GAD GAD domain CL0040 [flax] [poplar] tRNA_synt_II PF00152 [flax] [poplar] tRNA-synt_2 tRNA synthetases class II (D, K and N) CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Lus10035657 pacid=23147372 polypeptide=Lus10035657 locus=Lus10035657.g ID=Lus10035657.BGIv1.0 annot-version=v1.0 ATGTCCCTTCTCCTCCGTTCTCTCCCGCTCATTACCTCCCGCTCCAGAAGCTTTATTCCTTTCAAATCCCTTTCCAAGTTCCAATTTCCTAACCTCATCC TCAAAACCGGCAGGAACTTCTCATCTGTTTCCGCCTCCGTTAATTCTCCTCCTCCTCCCACCGAAGAGAACCTTCTCAAGCCTCCTCCAAGTCCCTGTAC TGACAAACTTGAATGGGTTTCCCGTACCGGTCTTTGTGGAGAATTGTCGATTGATGATGTCGGCAAGCGTGTTCGCCTCTGTGGATGGGTTGCTTTGCAC AGGGTTCATGGTGGCCTCACGTTTCTCAACCTCAGAGACCACACTGGCATTGTTCAGGTGACGACTCTCCCTGATGAATTCCCCGATGCTCATTCCGCCA TAAATGACTTGAGGGTGGAGTATGTAGTTGCAGTTGAAGGCGTTGTTCGGTCTAGGCCAAGTGCGTCTGTGAATAAGAAAATGAAAACCGGCTTGATCGA GCTGCCTGCAGAACATGTTCAAGTTTTGAATGTGGTAAGAACAAAGTTGCCATTTTTAGTTACCACTGGAGATGATGCTAAAGATTCAGTGAAAGAGGAG ATTCGACTGAGGTGGGCTGGAACATTTTATGCTTTGCCACAAAGCCCACAACTTTTTAAGCAGATGCTGATGGTCTCTGGTTTCGGCAAATATTATCAAG TGGCAAGATGTTTCAGAGATGAAGACTTAAGGGCAGATAGGCAACCTGAGTTCACTCAGCTTGATATGGAATTGGCTTTTGTGCCATTAGAGGAGATGTT AACACTTAATGAAGATTTGATCCGGAAGGTTTTTCTGGAGATCAAAGGTGTTCAACTACCTAATCCTTTCCCCCGACTTACATATGTGGAAGCTATGAGT CGATATGGCTCTGACAGACCAGACACACGATTTGAGCTCGAGCTGAAAGATGTGTCAGATATTTTTGTGGAGAGCCCTTTTAAGGTTTTTTCAGATAGCT TGAAGAATGGTGGAATTGTCAAAGCGTTATGTGTGCCTTTAGCTAGTAAAATATACTCGAACTCGGCTCTCAAGAAAGGTGATATTTTTAATGAGGCGAT CAAATCTGGGGCGAAGGGTCTGCCTTTCCTAAAGGTCATGGATAATTCTGATTTGGAGGGAGTATCTGCATTAGTATCTTCTTTGGATCAATCGAGAAAA GAGCAGCTGCTGAGACAATGCTCTGCAGGACCAGGGGATCTGATTTTGTTTGCAGTTGGTCATCATGCGTCTGTCAATAGGACGCTAGACCGCCTTAGAC TATTTGTTGCCAATCAACTAGGCCTCATTGACCATTCGAAGCATTCAATTCTTTGGATCACGGATTTCCCGATGTTCGAATGGAACGAGGCAGAGAAAAG GCTTGAGCCCTTGCACCACCCATTTACTGCGCCTAACCCTGAGGATATGAATGATCTAGCTTCTGCTCGCGCCCTTGCCTATGACATGGTTTACAATGGC ATTGAGATTGGTGGTGGAAGTTTGAGAATTTATAAACGTGATGTTCAGCAAAGGGTCTTTGAGACCATTGGCATATCCCCTGAACAGGCCGAATCGAAGT TTGGGTATCTTCTGGAAGCTCTAGACATGGGTGCCCCTCCACATGGAGGTATAGCGTATGGTTTGGATAGATTGGTGATGCTGCTGGCTGGTGCAACCTC CATTAGGGATGTGATTGCTTTCCCAAAGACAACTACAGCTCAGTGTGCCCTTACACGAGCACCATCCGCTGTCGATCCTCAGCAGCTCAATGATCTCTCG CTCCGCCATGTTCAACAATAA
AA sequence Show only first row Show all	>Lus10035657 pacid=23147372 polypeptide=Lus10035657 locus=Lus10035657.g ID=Lus10035657.BGIv1.0 annot-version=v1.0 MSLLLRSLPLITSRSRSFIPFKSLSKFQFPNLILKTGRNFSSVSASVNSPPPPTEENLLKPPPSPCTDKLEWVSRTGLCGELSIDDVGKRVRLCGWVALH RVHGGLTFLNLRDHTGIVQVTTLPDEFPDAHSAINDLRVEYVVAVEGVVRSRPSASVNKKMKTGLIELPAEHVQVLNVVRTKLPFLVTTGDDAKDSVKEE IRLRWAGTFYALPQSPQLFKQMLMVSGFGKYYQVARCFRDEDLRADRQPEFTQLDMELAFVPLEEMLTLNEDLIRKVFLEIKGVQLPNPFPRLTYVEAMS RYGSDRPDTRFELELKDVSDIFVESPFKVFSDSLKNGGIVKALCVPLASKIYSNSALKKGDIFNEAIKSGAKGLPFLKVMDNSDLEGVSALVSSLDQSRK EQLLRQCSAGPGDLILFAVGHHASVNRTLDRLRLFVANQLGLIDHSKHSILWITDFPMFEWNEAEKRLEPLHHPFTAPNPEDMNDLASARALAYDMVYNG IEIGGGSLRIYKRDVQQRVFETIGISPEQAESKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAGATSIRDVIAFPKTTTAQCALTRAPSAVDPQQLNDLS LRHVQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33760			tRNA synthetase class II (D, K...		Lus10035657 [exp]	0	1
AT5G01590			unknown protein		Lus10022672 [exp]	1.7	0.8977
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10039044 [exp]	2.4	0.8912
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10001461 [exp]	6.2	0.8561
AT4G25730			FtsJ-like methyltransferase fa...		Lus10023555 [exp]	7.6	0.8966
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Lus10037574 [exp]	8.4	0.8698
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10004105 [exp]	9.2	0.8720
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10021043 [exp]	9.2	0.8499
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10027486 [exp]	9.8	0.8429
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10004053 [exp]	10.5	0.8605
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	12.4	0.8462

Compare expression of checked genes

Lus10035657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.