Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10300 171 / 1e-55 RmlC-like cupins superfamily protein (.1) AT3G04300 126 / 2e-38 RmlC-like cupins superfamily protein (.1) AT4G28703 102 / 1e-28 RmlC-like cupins superfamily protein (.1) AT4G10280 95 / 3e-25 RmlC-like cupins superfamily protein (.1) AT4G10290 81 / 3e-20 RmlC-like cupins superfamily protein (.1) AT2G32180 61 / 4e-12 PTAC18 plastid transcriptionally active 18 (.1) AT2G32650 61 / 4e-12 RmlC-like cupins superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037245 [exp] 159 / 2e-50 AT4G10300 149 / 8e-47 RmlC-like cupins superfamily protein (.1) Lus10035660 [exp] 155 / 2e-48 AT4G10300 147 / 5e-46 RmlC-like cupins superfamily protein (.1) Lus10025947 [exp] 115 / 2e-33 AT4G28703 132 / 6e-41 RmlC-like cupins superfamily protein (.1) Lus10014252 [exp] 113 / 1e-32 AT4G28703 133 / 1e-41 RmlC-like cupins superfamily protein (.1) Lus10030017 [exp] 63 / 8e-13 AT2G32180 192 / 4e-64 plastid transcriptionally active 18 (.1) Lus10035307 [exp] 57 / 9e-11 AT2G32180 190 / 2e-63 plastid transcriptionally active 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G089600 [exp] 177 / 1e-57 AT4G10300 171 / 1e-55 RmlC-like cupins superfamily protein (.1) Potri.002G254800 [exp] 119 / 3e-35 AT3G04300 143 / 8e-46 RmlC-like cupins superfamily protein (.1) Potri.014G156900 [exp] 60 / 8e-12 AT2G32650 203 / 2e-68 RmlC-like cupins superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF05899 [flax] [poplar] Cupin_3 Protein of unknown function (DUF861)
Representative CDS sequence Show only first row Show all	>Lus10035659 pacid=23147545 polypeptide=Lus10035659 locus=Lus10035659.g ID=Lus10035659.BGIv1.0 annot-version=v1.0 ATGGCGATGAATGTCGTGGCGGGTACATGGACTGGGAGCTGCTTAGCAGTAGCGAACGATAATAAATTCACCGCGATAAAGCCAAAAGCATTTTTGGTCT CTCCTCCTAGAGCTGCAGCTTTTCTGTGTTTGTCAAGACGAGAGAGCATCGCCGGGCAGCAGCAGCGGCGGCGTTGTAGAGTAATGGCGACCCCGAAGGC AGAGGCTACAGGCACTGCGACGACTACGATTGAGAAATCGGGAATCAAGATCGTTAGAAACCCTCCCGAATCCAAACTCTCCGACCTCGGCGTTCGTTCT TGGCCCAAGTGGGGTTGTCCTCCAAGCAAGTTTCCATGGACATATTCTTCGAGGGAGACGTGCTATCTTCTCCAAGGAAAGGTAAAGGTTTATCCTGAAG GATCGGATGAAGGTGTTGAAATCGCTGCAGGAGACTTGGTTGAGTTCCCAAATGGGATGAGCTGCACTTGGGACGTCTCTGTTTCCGTTGATAAGCACTA TAAGTTCGATTGA
AA sequence Show only first row Show all	>Lus10035659 pacid=23147545 polypeptide=Lus10035659 locus=Lus10035659.g ID=Lus10035659.BGIv1.0 annot-version=v1.0 MAMNVVAGTWTGSCLAVANDNKFTAIKPKAFLVSPPRAAAFLCLSRRESIAGQQQRRRCRVMATPKAEATGTATTTIEKSGIKIVRNPPESKLSDLGVRS WPKWGCPPSKFPWTYSSRETCYLLQGKVKVYPEGSDEGVEIAAGDLVEFPNGMSCTWDVSVSVDKHYKFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10300			RmlC-like cupins superfamily p...		Lus10035659 [exp]	0	1
AT3G05170			Phosphoglycerate mutase family...		Lus10024659 [exp]	1.4	0.9412
AT2G37920		EMB1513	embryo defective 1513, copper ...		Lus10024339 [exp]	2.4	0.9248
AT5G20935			unknown protein		Lus10013382 [exp]	2.4	0.9255
AT1G61600			Protein of unknown function (D...		Lus10035379 [exp]	4.0	0.9118
AT1G61600			Protein of unknown function (D...		Lus10035372 [exp]	4.2	0.9018
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10017961 [exp]	5.3	0.9036
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10020729 [exp]	5.5	0.9101
AT2G36145			unknown protein		Lus10014224 [exp]	6.0	0.9081
AT3G05170			Phosphoglycerate mutase family...		Lus10032291 [exp]	6.2	0.8993
AT5G64460			Phosphoglycerate mutase family...		Lus10007093 [exp]	6.9	0.8708

Compare expression of checked genes

Lus10035659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.