Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10300 146 / 2e-45 RmlC-like cupins superfamily protein (.1) AT3G04300 103 / 5e-29 RmlC-like cupins superfamily protein (.1) AT4G10280 94 / 1e-24 RmlC-like cupins superfamily protein (.1) AT4G28703 86 / 5e-22 RmlC-like cupins superfamily protein (.1) AT4G10290 74 / 4e-17 RmlC-like cupins superfamily protein (.1) AT2G32180 59 / 3e-11 PTAC18 plastid transcriptionally active 18 (.1) AT2G32650 59 / 4e-11 RmlC-like cupins superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037245 [exp] 219 / 1e-73 AT4G10300 149 / 8e-47 RmlC-like cupins superfamily protein (.1) Lus10035659 [exp] 155 / 3e-48 AT4G10300 175 / 5e-57 RmlC-like cupins superfamily protein (.1) Lus10025947 [exp] 96 / 2e-25 AT4G28703 132 / 6e-41 RmlC-like cupins superfamily protein (.1) Lus10014252 [exp] 91 / 5e-24 AT4G28703 133 / 1e-41 RmlC-like cupins superfamily protein (.1) Lus10030017 [exp] 64 / 3e-13 AT2G32180 192 / 4e-64 plastid transcriptionally active 18 (.1) Lus10035307 [exp] 57 / 2e-10 AT2G32180 190 / 2e-63 plastid transcriptionally active 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G089600 [exp] 158 / 7e-50 AT4G10300 171 / 1e-55 RmlC-like cupins superfamily protein (.1) Potri.002G254800 [exp] 100 / 1e-27 AT3G04300 143 / 8e-46 RmlC-like cupins superfamily protein (.1) Potri.014G156900 [exp] 59 / 4e-11 AT2G32650 203 / 2e-68 RmlC-like cupins superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF05899 [flax] [poplar] Cupin_3 Protein of unknown function (DUF861)
Representative CDS sequence Show only first row Show all	>Lus10035660 pacid=23147425 polypeptide=Lus10035660 locus=Lus10035660.g ID=Lus10035660.BGIv1.0 annot-version=v1.0 ATGGCATGGACGACGGCGGATCTCCGTCTGCTTGCCTCCATCTTGATCTCGCTCTTGGCTCTTACTTCTCAAGCTCAACAAAGCGACATCAACGAACAGA AACGCCAGAGAAGTGAGGACGGAAATGGAATCCATGAGACGACGAAGGTTGATTCATCAGCAGCAATAATGATACCCACGGGACGAGGACGACTCACGAG CTTCTCCAGGCGGCGGATTATGGAGGAGGACCCCCTCACTGCCACTGTAACAGAAACAGTTGATAAATCGGGAATTAAGGTCGTCAAGAATCCTCCAGAC TCAAAGCTTGCTGCACTCGGAGTCCGCTCATGGCCGAGATGGGCATTTGCTCCGAGCAAATTCCCATGGACATATTCGGCGAATGAGACATCGTATCTAT TGGAAGGGAAGGCAAAGGTATACCCAGAGGGATCAGAGCAAGGCATTGAGATCACTGGTGGTGACTTGATTGATTTCCCTAAAGGGTTGAGCTGCACTTG GGAAGTTTCTGTTGCCATTTTCAAGCACTACAAGTTCAATCAGTGA
AA sequence Show only first row Show all	>Lus10035660 pacid=23147425 polypeptide=Lus10035660 locus=Lus10035660.g ID=Lus10035660.BGIv1.0 annot-version=v1.0 MAWTTADLRLLASILISLLALTSQAQQSDINEQKRQRSEDGNGIHETTKVDSSAAIMIPTGRGRLTSFSRRRIMEEDPLTATVTETVDKSGIKVVKNPPD SKLAALGVRSWPRWAFAPSKFPWTYSANETSYLLEGKAKVYPEGSEQGIEITGGDLIDFPKGLSCTWEVSVAIFKHYKFNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10300			RmlC-like cupins superfamily p...		Lus10035660 [exp]	0	1
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020360 [exp]	1.4	0.9557
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	3.5	0.9482
AT3G43740			Leucine-rich repeat (LRR) fami...		Lus10002117 [exp]	4.0	0.9361
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10034577 [exp]	5.7	0.9432
AT5G41810			unknown protein		Lus10001907 [exp]	6.0	0.9456
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012869 [exp]	9.2	0.9297
AT4G27290			S-locus lectin protein kinase ...		Lus10038553 [exp]	9.4	0.9348
AT4G31450			RING/U-box superfamily protein...		Lus10020145 [exp]	9.9	0.9376
AT5G05340			Peroxidase superfamily protein...		Lus10029062 [exp]	10.0	0.9387
AT3G10915			Reticulon family protein (.1.2...		Lus10034224 [exp]	12.0	0.9378

Compare expression of checked genes

Lus10035660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.