Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08170 390 / 8e-136 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) AT4G33770 358 / 1e-122 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2) AT5G16760 204 / 2e-63 AtITPK1 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) AT2G43980 69 / 1e-12 ATITPK4 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037247 [exp] 416 / 2e-147 AT4G08170 345 / 3e-119 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10032808 [exp] 406 / 3e-142 AT4G08170 500 / 5e-179 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10007689 [exp] 401 / 7e-140 AT4G08170 499 / 2e-178 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10020513 [exp] 348 / 3e-120 AT4G08170 331 / 2e-113 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10039098 [exp] 217 / 3e-66 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1) Lus10038765 [exp] 208 / 4e-65 AT5G16760 350 / 4e-121 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10035811 [exp] 182 / 5e-55 AT5G16760 311 / 1e-105 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10012447 [exp] 88 / 9e-22 AT4G08170 80 / 7e-20 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10033768 [exp] 59 / 1e-09 AT2G43980 395 / 4e-135 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G149800 [exp] 411 / 5e-144 AT4G08170 518 / 0.0 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.009G084600 [exp] 404 / 1e-141 AT4G08170 379 / 1e-131 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.003G094100 [exp] 241 / 2e-77 AT5G16760 373 / 2e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.001G140000 [exp] 233 / 5e-74 AT5G16760 372 / 6e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.019G047200 [exp] 193 / 5e-59 AT5G16760 332 / 1e-113 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.017G007500 [exp] 71 / 3e-13 AT2G43980 534 / 0.0 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF05770 [flax] [poplar] Ins134_P3_kin Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Lus10035662 pacid=23147341 polypeptide=Lus10035662 locus=Lus10035662.g ID=Lus10035662.BGIv1.0 annot-version=v1.0 ATGAGGTTAAGCGGGGAAATCTCGCAAGGGGAAGGAGAAAAGAGAGACAAAGAAGAAGGTGAGGGGATGGAATCAGTGTCAATGCAGCCGCCATTGGTGG TGGTTGGCTACGCCTTGACTTCCAAGAAGAAGAATAGCTTCTTGCAGCCTAAGTTTCAATTGCTAGCAAGAGATAACGGGGTATTGTTCATTGCTATCGA TCAGAACAAACCATTGGATGATCAAGGGCCTTTTGACATTGTTTTACACAAGGTGTTAGGGAACGATTGGTACAAAGTAATTGAGGACTACATGCAAAAG CATCCAGATGTGACTGTTATTGATCCTCCAGACGCAATCAGACATCTGCAAAATCGACAGTCTATGCTCCAACATGTAGCTGATCTGAACTTGTCCGATT CCTATGGTAAAGTTTGTATCCCAAGGCAATTGGTTATTCACAGAGATCCATCATCCATTGCTCTCGAAGTTTCCAAGGCTGGAATAAAGCTACCTTTAGT TGCAAAACCACTAATGGTGGATGGAAGTGCTAAATCACATGAGTTGTGTCTTGCCTATGATCACTCCTCTCTCTCAGAACTTGAACCTCCTTTGGCCCTG CAGGAGTTTGTAAATCATGGTGGTGTTCTGTTTAAGATTTACATAATTGGTGAAGCCATCAAAGTTGTCCGACGTTTATCCCTGCCTAATGTCAGTAGTC GTGAGCTAGCAAAAGTAGCTGGCCTGATGCCTTTCCCCCGAGTTTCGTGTGCTTCAGCCTCCGCGGATAATGCTGATTTAGATCCTTCAGTTGCAGAACT CCCACCGCGACCTTTGTTAGAGAGGCTTGCAGAAGAGCTTCGTCGTAAGCTGGGACTGAGGTTGTTCAACATAGATATGATTCGAGAACACGAGACGAAA GATGTCTTTTATGTCATCGACATCAACTACTTCCCTGGTTATGGGAAAATGCCAGATTATGAGCAGATATTCACCGATTTCCTACTGAGCATTGCGCAGA GCAAGCAGAAGAAGAGACTGACTACATAG
AA sequence Show only first row Show all	>Lus10035662 pacid=23147341 polypeptide=Lus10035662 locus=Lus10035662.g ID=Lus10035662.BGIv1.0 annot-version=v1.0 MRLSGEISQGEGEKRDKEEGEGMESVSMQPPLVVVGYALTSKKKNSFLQPKFQLLARDNGVLFIAIDQNKPLDDQGPFDIVLHKVLGNDWYKVIEDYMQK HPDVTVIDPPDAIRHLQNRQSMLQHVADLNLSDSYGKVCIPRQLVIHRDPSSIALEVSKAGIKLPLVAKPLMVDGSAKSHELCLAYDHSSLSELEPPLAL QEFVNHGGVLFKIYIIGEAIKVVRRLSLPNVSSRELAKVAGLMPFPRVSCASASADNADLDPSVAELPPRPLLERLAEELRRKLGLRLFNIDMIREHETK DVFYVIDINYFPGYGKMPDYEQIFTDFLLSIAQSKQKKRLTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10035662 [exp]	0	1
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10037296 [exp]	7.1	0.7288
AT2G38660			Amino acid dehydrogenase famil...		Lus10043398 [exp]	8.5	0.7332
					Lus10013984 [exp]	23.4	0.6753
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10031559 [exp]	27.7	0.6923
AT2G15220			Plant basic secretory protein ...		Lus10014106 [exp]	28.5	0.6855
AT5G35180			Protein of unknown function (D...		Lus10040011 [exp]	37.8	0.7018
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10036500 [exp]	48.6	0.6959
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10011990 [exp]	58.0	0.6930
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10003403 [exp]	68.1	0.6741
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10014439 [exp]	68.4	0.6683

Compare expression of checked genes

Lus10035662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.