Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76600 120 / 4e-34 unknown protein AT1G21010 119 / 1e-33 unknown protein AT5G66580 71 / 1e-15 unknown protein AT3G50800 67 / 3e-14 unknown protein AT2G23690 67 / 5e-14 unknown protein AT4G37240 59 / 5e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037249 [exp] 314 / 7e-111 AT1G76600 130 / 4e-38 unknown protein Lus10012442 [exp] 200 / 8e-66 AT1G76600 152 / 2e-46 unknown protein Lus10033761 [exp] 183 / 4e-59 AT1G76600 150 / 1e-45 unknown protein Lus10036322 [exp] 75 / 1e-17 AT1G76600 62 / 9e-16 unknown protein Lus10019659 [exp] 70 / 2e-15 AT5G66580 141 / 4e-44 unknown protein Lus10016785 [exp] 59 / 5e-11 AT2G23690 138 / 4e-42 unknown protein Lus10000739 [exp] 51 / 1e-08 AT5G66580 105 / 6e-30 unknown protein Lus10036031 [exp] 42 / 6e-05 AT5G12340 192 / 1e-61 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G259100 [exp] 136 / 1e-40 AT1G21010 186 / 9e-60 unknown protein Potri.002G002100 [exp] 124 / 1e-35 AT1G21010 163 / 1e-50 unknown protein Potri.007G033400 [exp] 68 / 2e-14 AT2G23690 165 / 7e-53 unknown protein Potri.004G149600 [exp] 67 / 4e-14 AT4G37240 125 / 5e-37 unknown protein Potri.005G130200 [exp] 65 / 2e-13 AT2G23690 174 / 2e-56 unknown protein Potri.009G110600 [exp] 61 / 9e-12 AT2G23690 112 / 1e-31 unknown protein Potri.009G110700 [exp] 45 / 7e-06 AT5G66580 77 / 2e-18 unknown protein Potri.015G036800 [exp] 44 / 9e-06 AT1G18290 122 / 1e-35 unknown protein Potri.004G149800 [exp] 44 / 1e-05 AT5G66580 91 / 7e-24 unknown protein Potri.012G045600 [exp] 44 / 1e-05 AT1G18290 129 / 1e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035664 pacid=23147585 polypeptide=Lus10035664 locus=Lus10035664.g ID=Lus10035664.BGIv1.0 annot-version=v1.0 ATGGGAGTGTGTTTCTCATCGTCGTCCTCAGATTCTCACCGTGATTCTCTTCCGCCTACAGCAAAGCTCGTCTCCCTGACCGGCGATCTCCCCGATTCCC CGCCGCTCGTCTCCGTCGCTCAAGTTCTCCGCCACGAGTCTGCAGCCTCCGATTACTTCATCTGCAATTCCGATTTCTTATCGTACGACGAACCAATCCC TGCTCTACGCACCGACGTCGTATTGCTCCCCAATCAGCTCTACTTCCTCCTGCCGGTCTCCAACCTCAATTCCACCCTCACTGCTCCGCAAATGGCAGCT CTAGCCATCAGAGCTAGCCAGGCTCTCCAGATCTCAGGCAATAAAAAATCCAGCGCCATTTCTCCTCTTCACTTCCTGGAAGATGATAGCGATTATAATC TGCCGCTGATCAAGGAGCCGCCGATGCAACCGGCTCGTCAATATCGGAGGTCCAGATCTATTAGGAAATTGCAGAGGTATGCTTCCAGACGAGCGAGATC GGCCGTTGGTTCTTTCAAGCTCCGAATGGCTACAATCTACGAAGGCACCGTCCTTTGA
AA sequence Show only first row Show all	>Lus10035664 pacid=23147585 polypeptide=Lus10035664 locus=Lus10035664.g ID=Lus10035664.BGIv1.0 annot-version=v1.0 MGVCFSSSSSDSHRDSLPPTAKLVSLTGDLPDSPPLVSVAQVLRHESAASDYFICNSDFLSYDEPIPALRTDVVLLPNQLYFLLPVSNLNSTLTAPQMAA LAIRASQALQISGNKKSSAISPLHFLEDDSDYNLPLIKEPPMQPARQYRRSRSIRKLQRYASRRARSAVGSFKLRMATIYEGTVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21010			unknown protein		Lus10035664 [exp]	0	1
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10011820 [exp]	2.0	0.8929
AT1G76600			unknown protein		Lus10037249 [exp]	2.6	0.9033
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10026409 [exp]	4.5	0.8554
AT1G29290			unknown protein		Lus10029256 [exp]	4.6	0.8684
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10032764 [exp]	7.2	0.7954
AT5G13200			GRAM domain family protein (.1...		Lus10035154 [exp]	7.7	0.8327
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	9.2	0.8617
AT4G25800			Calmodulin-binding protein (.1...		Lus10029861 [exp]	9.9	0.8300
AT2G26530		AR781	Protein of unknown function (D...		Lus10032766 [exp]	10.8	0.8303
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10021263 [exp]	11.5	0.8469

Compare expression of checked genes

Lus10035664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.