Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33780 139 / 6e-41 unknown protein AT1G69935 69 / 2e-14 SHW1 short hypocotyl in white light1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037250 [exp] 311 / 6e-108 AT4G33780 150 / 9e-45 unknown protein Lus10013285 [exp] 87 / 8e-21 AT1G69935 110 / 1e-30 short hypocotyl in white light1 (.1) Lus10030808 [exp] 81 / 1e-18 AT1G69935 107 / 5e-29 short hypocotyl in white light1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G289600 [exp] 137 / 3e-40 AT4G33780 150 / 9e-46 unknown protein Potri.008G190900 [exp] 91 / 2e-22 AT1G69935 91 / 1e-22 short hypocotyl in white light1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035665 pacid=23147487 polypeptide=Lus10035665 locus=Lus10035665.g ID=Lus10035665.BGIv1.0 annot-version=v1.0 ATGTCGTCTCTCGCCGCCGCCGGCATCAGTCACTCTCCCCGCCATGTCGTTGACTGCCGGTCTCCCCTCTCCACGACAAGTGTTCTATCCCCCCGCGCTC CTTCTCTTCCCCTTCCTCGCGCCTTCTTCACATCTCAACTGAATTACTCTCCCAGATTTTACAATTCTGGAAAACCCCTTCCTTCTCGTCCTTTCCTGGG TCGCCCGGGCTCCAGGCGGAGCTCCGATTTCAATCCCAAGGTCGACGATAGCGTCAGTTCCAGATATTGGAGCCGTTCAATTGGTAGGTCGGAGTTTGTG GACGACGACGAAGTTGATGATTATGATGACGACGATGAGGAAGAGGAGGAAGATCGGAGTCTCGATCTGTTCCTCAAATTCGTTCAAAATATTTACAAGA AGATATCTAAGCGAGCGAGGAAGGCCGTGCGCTCTGTTTTGCCCGCTATCATCCCTTCTAAATTGGTCGGGTTTTCGGTCGATGGAGTGATAGTGCTTGC GTTCTTATGGGTTCTGAAAGCATTTCTTGAGGTGGTTTGTACGGTTGGAAGTGTGGTGTTCGTGAGCATCTTACTGACCCGTGTTGTATGGACGGGTGTT GCGTATCTACAAGAGAGCCGTATACTGAGGATGAATGGAGAAGATGATGATGATGGTGATCGACGTGCTTGGACTGGTGTAAGGCCAGCAACTTGA
AA sequence Show only first row Show all	>Lus10035665 pacid=23147487 polypeptide=Lus10035665 locus=Lus10035665.g ID=Lus10035665.BGIv1.0 annot-version=v1.0 MSSLAAAGISHSPRHVVDCRSPLSTTSVLSPRAPSLPLPRAFFTSQLNYSPRFYNSGKPLPSRPFLGRPGSRRSSDFNPKVDDSVSSRYWSRSIGRSEFV DDDEVDDYDDDDEEEEEDRSLDLFLKFVQNIYKKISKRARKAVRSVLPAIIPSKLVGFSVDGVIVLAFLWVLKAFLEVVCTVGSVVFVSILLTRVVWTGV AYLQESRILRMNGEDDDDGDRRAWTGVRPAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33780			unknown protein		Lus10035665 [exp]	0	1
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10028459 [exp]	3.2	0.8896
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Lus10037273 [exp]	3.5	0.8854
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10003466 [exp]	3.5	0.9004
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10036136 [exp]	5.0	0.8740
AT3G60450			Phosphoglycerate mutase family...		Lus10009779 [exp]	7.5	0.8589
AT2G46080			unknown protein		Lus10018821 [exp]	8.7	0.8502
AT2G30630			P-loop containing nucleoside t...		Lus10041167 [exp]	9.2	0.8597
AT4G33780			unknown protein		Lus10037250 [exp]	9.2	0.8834
AT4G12720		ATNUDX7, GFG1, ...	GROWTH FACTOR GENE 1, Arabidop...		Lus10006365 [exp]	10.2	0.8597
AT1G59710			Protein of unknown function (D...		Lus10030804 [exp]	10.9	0.8734

Compare expression of checked genes

Lus10035665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.