Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50000 374 / 6e-131 methyltransferases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037251 [exp] 345 / 2e-120 AT1G50000 207 / 2e-66 methyltransferases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G290100 [exp] 412 / 2e-145 AT1G50000 345 / 8e-119 methyltransferases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [flax] [poplar] SPOUT PF04452 [flax] [poplar] Methyltrans_RNA RNA methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10035666 pacid=23147667 polypeptide=Lus10035666 locus=Lus10035666.g ID=Lus10035666.BGIv1.0 annot-version=v1.0 ATGAGCAGCATTGCAATGTTAAGGCCTTGCTTTGCTGCTGCTGCTACTACTACTACTACCACTAGGCTATCTGCTCTCCGTTTCAAAACAAGGGCTTTCT CGTCACCAACGTCCAACGGCTCCAACCAGTCTCGCGGCGGACTCCCCCGCTTCTTCTCCGAGCAACTCCCCTCGTCTAAGGGAGGTGTTGTTCGTGTACA AGGAGATGAGTTTTGGCACATGACTAAAGTCCTAAGGTTGACTGCCAATGACAGGGTGGAGCTGTTCAATGGCAAAGGAGGTGCAATAGAAGGATGCATA CAAAGAATTGACCGTGCTGGACTTGACTTTGTTGCACTGGAAAATCCCAAGCTAGTTCTTCCTCAAAATACTCAGTGGCAAGTCTTTACAGCATTTGGTA CTCTAAAGGGCGGCAGAGCTGACTGGCTTGTAGAGAAATGCACAGAGCTTGGAGCTCATAGTGTGACCCCTCTGCTGACAGACCGTTCTCCATCAATCTC AGAAAATCGAGTTGACCGGTTGCAGCGTGTTGTTCTAGCAGCAACCAAACAATGTCAGAGACTGCATGGGATGATTCTGAATCCTCCTTTAACCATTGAT GAGCTGTTACCTCTTGTTTCCCAGTCGAAACTATCTTTTTTGGCAACGGCAGAAGCTCCCCCTCTAGTTAGTGCAATAGCTTCATTGAGGAACGAACGGA GTGGATTGATGATCGTTGGACCAGAAGGAGATTTCACAGAGGAAGAGTTGAATAAGCTTATAACAGCAGGTGTGGTGAGTGTTGGTCTCGGGCCACTTCG GCTGCGTGTTGAAACTGCTACAATAGCACTTTTGTCCACACTTATGCTATGGTCCGACTCTCACCAACTTAACAATTCATAA
AA sequence Show only first row Show all	>Lus10035666 pacid=23147667 polypeptide=Lus10035666 locus=Lus10035666.g ID=Lus10035666.BGIv1.0 annot-version=v1.0 MSSIAMLRPCFAAAATTTTTTRLSALRFKTRAFSSPTSNGSNQSRGGLPRFFSEQLPSSKGGVVRVQGDEFWHMTKVLRLTANDRVELFNGKGGAIEGCI QRIDRAGLDFVALENPKLVLPQNTQWQVFTAFGTLKGGRADWLVEKCTELGAHSVTPLLTDRSPSISENRVDRLQRVVLAATKQCQRLHGMILNPPLTID ELLPLVSQSKLSFLATAEAPPLVSAIASLRNERSGLMIVGPEGDFTEEELNKLITAGVVSVGLGPLRLRVETATIALLSTLMLWSDSHQLNNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50000			methyltransferases (.1.2)		Lus10035666 [exp]	0	1
AT1G58280			Phosphoglycerate mutase family...		Lus10032821 [exp]	1.0	0.8583
AT4G01040			Glycosyl hydrolase superfamily...		Lus10005946 [exp]	8.1	0.7741
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10038185 [exp]	9.3	0.8137
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10014728 [exp]	9.4	0.7890
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10037693 [exp]	15.5	0.7843
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Lus10020742 [exp]	16.0	0.7130
AT1G54385			ARM repeat superfamily protein...		Lus10007428 [exp]	17.5	0.8041
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10000255 [exp]	22.6	0.7703
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Lus10042215 [exp]	23.3	0.7387
AT1G12330			unknown protein		Lus10032197 [exp]	31.2	0.7484

Compare expression of checked genes

Lus10035666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.