Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13340 669 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G55680 668 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G56190 654 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G78070 506 / 2e-178 Transducin/WD40 repeat-like superfamily protein (.1) AT1G36070 485 / 1e-170 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 62 / 3e-10 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 59 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G41500 58 / 7e-09 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G08390 57 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 55 / 1e-07 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037252 [exp] 890 / 0 AT1G55680 685 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021975 [exp] 620 / 0 AT5G56190 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041268 [exp] 610 / 0 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041102 [exp] 509 / 1e-179 AT1G78070 622 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10036428 [exp] 485 / 9e-170 AT1G78070 598 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 63 / 1e-10 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 63 / 2e-10 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10003487 [exp] 61 / 5e-10 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 62 / 7e-10 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G000500 [exp] 759 / 0 AT3G13340 683 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G471800 [exp] 699 / 0 AT3G13340 736 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G168600 [exp] 694 / 0 AT3G13340 736 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G147400 [exp] 607 / 0 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G233700 [exp] 603 / 0 AT3G13340 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G168600 [exp] 521 / 0 AT1G78070 649 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G094100 [exp] 513 / 0 AT1G78070 655 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.016G000800 [exp] 216 / 6e-69 AT5G56190 201 / 8e-64 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G147500 [exp] 119 / 6e-32 AT3G13340 124 / 2e-34 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G009500 [exp] 66 / 1e-11 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10035667 pacid=23147596 polypeptide=Lus10035667 locus=Lus10035667.g ID=Lus10035667.BGIv1.0 annot-version=v1.0 ATGTCACAGTATCCAGGGGAAGAGGTTGATTACGTGGTAGATGATTATGAGATGCCAGAAGCAGATGATGATTTGTACTTTCGTGGGGGATTAGTGGTCT ACTCTGACTCTGATGGTGATGAGGACGAATACGATAATTTGGACAACAAGTTACCTGACATGCTTGCTGCTGATGCTAGACGTGGAAAGGATATACAAGG GATTCCATGGGACAGTCTGAGCATTTCTCGTGAGAAGTACAGACAAACTAGGTTAGAGCAGTACAAAAATTATGAAAACATACCTCATTCTGGAGAAGGT TCTGAAAAGGAATGCAATGCGACAAAGAAAGGGGGTATGTATTATGATTTCTGCCGCAATACAAGATCAGTGAAGTCAACAATCCTTCATTTCCAGCTGC GGAACTTGGTATGGTCGACGTCAAAGCATGATGTGTATCTCATGTCACATTATTCCATTATTCACTGGTCCCCATTGTCCTGCAAGAAGACTGAAGTTCT TAATGTCTCTGGCCATGTTGCACCGCAAGAGAAACATCCCGGGAGTCTCCTGGAAGGATTTACCCAAACCCAAGTCAGTACACTGGCAGTACGTGATAAT TTGGTGATTGCTGGGGGGTTCCAAGGAGAACTCATTTGCAAATATCTAGATCGGCCTGGAGTTAGTTACTGCTCAAGGACAACTTATGATGAAAATGCTA TAACCAATGCTGTTGAGATTTATGAATGTCGCAGCGGATCAGTTCACTTTATGGCTTCTAACAATGACTGTGGAGTTAGAGATTTTGACATGGAGAGATT TCAACCTTCCACAAATTTCAGCTTTCCGTGGCCTGTCAATCATACATCCCTTTGTCCAGATGGCAAAATCCTTGCTATTGTTGGAGATAACCCAGAGGGG ATACTGGTGGATTCTCAAACTGGAAAGACAATTGCGACTTTACGTGGGCACTTGGATTTCTCATTTGCATCTGCATGGCATCCGAATGGTTATATATTCG CGACGGGGAACCAGGACAAGACTTGCCGTGTGTGGGATGCTAGGAATCTATCAAGATCGGTAGCGGTATTGAAGGGGAACTTGGGGGCTATAAGATCAAT AAGGTTCACGTCGGATGGACAGTTCATGGCAATGGCAGAGCCAGCAGACTTTGTGCATGTGTATGATGCGAAGAATGGGTTTGAGAAGGAGCAGGAGATT GATTTCTTCGGGGAGATATCGGGTGTGTCGTTCAGCCCAGATACAGAGTCGCTGTTTATTGGGGTGTGGGATAGAACATATGGAAGCCTGCTTCAGTATA ACAGACGCAGGAGCTATGGTTACTTGGATACCTTACTGTGA
AA sequence Show only first row Show all	>Lus10035667 pacid=23147596 polypeptide=Lus10035667 locus=Lus10035667.g ID=Lus10035667.BGIv1.0 annot-version=v1.0 MSQYPGEEVDYVVDDYEMPEADDDLYFRGGLVVYSDSDGDEDEYDNLDNKLPDMLAADARRGKDIQGIPWDSLSISREKYRQTRLEQYKNYENIPHSGEG SEKECNATKKGGMYYDFCRNTRSVKSTILHFQLRNLVWSTSKHDVYLMSHYSIIHWSPLSCKKTEVLNVSGHVAPQEKHPGSLLEGFTQTQVSTLAVRDN LVIAGGFQGELICKYLDRPGVSYCSRTTYDENAITNAVEIYECRSGSVHFMASNNDCGVRDFDMERFQPSTNFSFPWPVNHTSLCPDGKILAIVGDNPEG ILVDSQTGKTIATLRGHLDFSFASAWHPNGYIFATGNQDKTCRVWDARNLSRSVAVLKGNLGAIRSIRFTSDGQFMAMAEPADFVHVYDAKNGFEKEQEI DFFGEISGVSFSPDTESLFIGVWDRTYGSLLQYNRRRSYGYLDTLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55680			Transducin/WD40 repeat-like su...		Lus10035667 [exp]	0	1
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10041016 [exp]	1.0	0.9649
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	2.0	0.9602
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10029045 [exp]	2.2	0.9483
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10026166 [exp]	2.8	0.9452
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10016999 [exp]	3.5	0.9473
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	4.6	0.9517
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10025696 [exp]	4.6	0.9468
AT5G13500			unknown protein		Lus10036037 [exp]	6.8	0.9323
AT1G55680			Transducin/WD40 repeat-like su...		Lus10037252 [exp]	7.0	0.9233
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	7.3	0.9444

Compare expression of checked genes

Lus10035667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.