Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35615 376 / 4e-127 Eukaryotic aspartyl protease family protein (.1) AT1G31450 361 / 2e-121 Eukaryotic aspartyl protease family protein (.1) AT1G64830 339 / 5e-113 Eukaryotic aspartyl protease family protein (.1) AT5G33340 329 / 5e-109 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT2G03200 219 / 3e-66 Eukaryotic aspartyl protease family protein (.1) AT1G01300 199 / 3e-58 Eukaryotic aspartyl protease family protein (.1) AT2G28010 192 / 2e-56 Eukaryotic aspartyl protease family protein (.1) AT3G61820 189 / 1e-54 Eukaryotic aspartyl protease family protein (.1) AT2G28040 187 / 1e-54 Eukaryotic aspartyl protease family protein (.1) AT2G28030 180 / 6e-52 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037254 [exp] 747 / 0 AT2G35615 392 / 1e-133 Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 303 / 1e-98 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 302 / 2e-98 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 299 / 4e-97 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 296 / 1e-95 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 294 / 5e-95 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 291 / 6e-94 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 288 / 7e-93 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002613 [exp] 279 / 3e-89 AT5G33340 406 / 4e-139 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G105300 [exp] 407 / 2e-139 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 311 / 5e-102 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 305 / 2e-99 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 205 / 7e-61 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 203 / 2e-60 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 202 / 3e-59 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 199 / 2e-58 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 186 / 3e-53 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 177 / 3e-49 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G106300 [exp] 172 / 5e-48 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10035668 pacid=23147566 polypeptide=Lus10035668 locus=Lus10035668.g ID=Lus10035668.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCTCATTTCACACTACTACTACTCTCACTACTCATTCTTCTCCTCCCACACATTGCTACTTCCACGACGACCACGACGATCACCGTAGACC TCATCCACCGTGACTCCCCACTCTCCCCACTCCACACCCCAAACACCACCTTCTCCGACCGCCTCCACGCCTCCTTCCTCCGCTCCATCTCCCGCCACCG AGCACTGGACCACGTTGACTTCCAAACCGACCTAGTCCCAAGCGGAGGAGAGTACATGATGAACCTATCAATTGGGACCCCACCTTTCCCGATCCTAGTC ATAGCCGACACGGGAAGCGACCTCACCTGGCTACAGTCCAAGCCATGCGACCAATGCTACCCACAAAAGGGCCCCATCTTCGACCCTTCGAATTCCACCA CGTTCCGCAAGCTCCCATGCATGACCCCGCCATGCAACTCGTTAGACGAGTCCGCCCGCTCCTGCACCGACGACCAAACCACCTGCGGCTACACCTACTC CTACGGCGACCACTCCTACACCACCGGATACCTCGCCGCGGACACCTTCACCGTCTCGTCGGCGTCCATTCCGAACGTCGCGTTTGGCTGCGGGACTAGA AACGGCGGCAACTTTGACGACCTAGGCTCCGGGATTGTCGGACTGGGAGGTGGGGACCTCTCTTTCGTCTCTCAGTTAGGGGGCAGGATTAGGAAGAAGT TCTCCTACTGCCTCCTCCCACTCGAGGCCGAAATATCGGCACAATCCCAACCGTCAGATTCGGCTACAAGCAGGATTGTGTTTGGGGACAATCCGGTCTT TTCAGCTCCATCAAACGGCGTCGTTTCTACGACTCCTTTAGTGAAGAAGGATCCTTCGACTTATTACTATTTAACCCTGGAGGCAATCACTGTAGGGAGA AAGAAGCTGCTTTACTCGAAACCGACGTCGTTGGATGCATCGGCGGTGGGGGTGGAGGAAGGGAACATAATAATAGACTCAGGGACGACGCTGACGTTCT TGGAAGCGGAATTCTACAGCTCGTTGGAGGCAGCTTTGGTGGAGGAGATAAAGATGGAGAGGGCTAACGACGTGAAGGATATGTTCAGTCTTTGCTTTAA GAAGAAGGAGAAGGAGGAGGTTGGGTTGCCGGCGATGAAGGTGCATTTCCGGGGAGGGGCGGAGGTGGAGTTGAAGCCGGTGAACACGTTTGTGGCGGCG GAGGAGGGATTGGTGTGCTTTACGATGCTGCCGACGAAAGATGTGGGGATATATGGGAATTTGGCTCAGATGAATTTTGTTGTTGGGTATGACCTTGGGA AAAGGACCGTCTCCTTCCTCCCTCGGATTGCTCCAAGCATTAGTGTTCTGGACACACAGCTGCATTGGAGAGGATAA
AA sequence Show only first row Show all	>Lus10035668 pacid=23147566 polypeptide=Lus10035668 locus=Lus10035668.g ID=Lus10035668.BGIv1.0 annot-version=v1.0 MAAPHFTLLLLSLLILLLPHIATSTTTTTITVDLIHRDSPLSPLHTPNTTFSDRLHASFLRSISRHRALDHVDFQTDLVPSGGEYMMNLSIGTPPFPILV IADTGSDLTWLQSKPCDQCYPQKGPIFDPSNSTTFRKLPCMTPPCNSLDESARSCTDDQTTCGYTYSYGDHSYTTGYLAADTFTVSSASIPNVAFGCGTR NGGNFDDLGSGIVGLGGGDLSFVSQLGGRIRKKFSYCLLPLEAEISAQSQPSDSATSRIVFGDNPVFSAPSNGVVSTTPLVKKDPSTYYYLTLEAITVGR KKLLYSKPTSLDASAVGVEEGNIIIDSGTTLTFLEAEFYSSLEAALVEEIKMERANDVKDMFSLCFKKKEKEEVGLPAMKVHFRGGAEVELKPVNTFVAA EEGLVCFTMLPTKDVGIYGNLAQMNFVVGYDLGKRTVSFLPRIAPSISVLDTQLHWRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35615			Eukaryotic aspartyl protease f...		Lus10035668 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Lus10004046 [exp]	6.4	0.7994
AT4G10265			Wound-responsive family protei...		Lus10039760 [exp]	7.1	0.7333
AT2G29040			Exostosin family protein (.1)		Lus10003440 [exp]	7.9	0.7695
					Lus10031595 [exp]	8.1	0.7621
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031579 [exp]	8.5	0.7592
AT3G58860			F-box/RNI-like superfamily pro...		Lus10003216 [exp]	12.2	0.6766
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002242 [exp]	15.2	0.6173
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10014307 [exp]	15.6	0.7354
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	17.9	0.7313
					Lus10019810 [exp]	18.2	0.7565

Compare expression of checked genes

Lus10035668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.