Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22370 470 / 4e-167 AtHSR3, ATAOX1A, AOX1A hyper-sensitivity-related 3, alternative oxidase 1A (.1) AT3G22360 460 / 1e-163 AOX1B alternative oxidase 1B (.1) AT3G27620 451 / 5e-160 AOX1C alternative oxidase 1C (.1) AT1G32350 411 / 3e-144 AOX1D alternative oxidase 1D (.1) AT5G64210 407 / 5e-142 AOX2 alternative oxidase 2 (.1) AT4G22260 66 / 8e-12 IM1, IM IMMUTANS, Alternative oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020523 [exp] 414 / 8e-145 AT5G64210 462 / 4e-164 alternative oxidase 2 (.1) Lus10005372 [exp] 413 / 2e-144 AT5G64210 453 / 2e-160 alternative oxidase 2 (.1) Lus10002872 [exp] 60 / 1e-09 AT4G22260 466 / 1e-163 IMMUTANS, Alternative oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G001500 [exp] 466 / 1e-165 AT3G22370 518 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.015G019800 [exp] 463 / 3e-164 AT3G22370 526 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.012G001600 [exp] 461 / 1e-163 AT3G22370 475 / 4e-169 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.003G103900 [exp] 416 / 3e-146 AT1G32350 433 / 1e-153 alternative oxidase 1D (.1) Potri.011G021800 [exp] 59 / 1e-09 AT4G22260 457 / 7e-162 IMMUTANS, Alternative oxidase family protein (.1) Potri.004G002600 [exp] 57 / 1e-08 AT4G22260 424 / 6e-149 IMMUTANS, Alternative oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF01786 [flax] [poplar] AOX Alternative oxidase
Representative CDS sequence Show only first row Show all	>Lus10035670 pacid=23147538 polypeptide=Lus10035670 locus=Lus10035670.g ID=Lus10035670.BGIv1.0 annot-version=v1.0 ATGATGATGGCGTCCAAGGGTCGGAGTGCTGCGAGGCTGGCCGTGGCGGTGCTGACGCTACGCAATTTCTCGACAGCAAGGGCCGGAGTTGTTTCTCGGC AGGCCGTCGGAATCTCAAGAAGCAGCGGAGTCCAGGCTCCGGCGGCGGCGGCGGCGTCTGAGTGGTGGATTCGAGGTCCAGCTGGGCGGGTCGGGGTTGA CCGTACGTTTGCGACGTTGACTCTCGGGGAGCAGGAACAGCAGGACGAGAAGAAAGAGCAGCAGCAGCAAGAGGCAGGAACTGGAGGCGGCGGAGGGATG AACGGAAAAGGGAACGGAGAGGAAGAGAAGGGAATTGTGAGTTACTGGGAGATACCGACGAGGAAGATTGTGAAGGCTGATGGATCGGATTGGAAGTGGA ATTCTTTCATGCCATGGGAGACGTACAAGGCGGATACATCAATTGATCTGAAGAAGCATCATAAGCCATCAACGTTGCTCGACAAATTCGCATTCTGGTC TGTCAAATCCCTCCGCTGGCCAACCGACTTGTTCTTTCAGAGGCGATATGGGTGCCGAGCAATGATGCTGGAGACAGTGGCAGCAGTGCCAGGGATGGTA GGAGGGATGTTGCTCCACTGCAAGTCACTTAGGAAGTTTGAGCACAGCGGTGGATGGATCCGAGCACTCCTGGAAGAAGCAGAGAACGAGAGGATGCACC TCATGACATTCATGGAAGTTGCTCAGCCTAAGTGGTACGAGCGTGCTTTGGTCATGGCAGTTCAGGGCGTCTTCTTCAACGCCTACTTTTTAGGGTACAT CATCTCCCCCAAATTTGCACACAGAATGGTGGGCTACTTGGAAGAGGAGGCCATCCACTCCTACACCGAGTTCCTCAAGGAGCTTGACAAGGGCAACATT GAGAATGTGCCTGCTCCTGCAATCGCCATCGACTACTGGAGGCTCCCTGCTGATGCTACATTAAGAGATGTTGTCGTGGTTGTCAGAGCTGATGAGGCTC ATCATCGCGATGTCAATCACCTTGCTTCTGACATACACTACCAGGGACAGGAACTCAAGGAAACTCCAGCACCGATTGGGTACCACTGA
AA sequence Show only first row Show all	>Lus10035670 pacid=23147538 polypeptide=Lus10035670 locus=Lus10035670.g ID=Lus10035670.BGIv1.0 annot-version=v1.0 MMMASKGRSAARLAVAVLTLRNFSTARAGVVSRQAVGISRSSGVQAPAAAAASEWWIRGPAGRVGVDRTFATLTLGEQEQQDEKKEQQQQEAGTGGGGGM NGKGNGEEEKGIVSYWEIPTRKIVKADGSDWKWNSFMPWETYKADTSIDLKKHHKPSTLLDKFAFWSVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMV GGMLLHCKSLRKFEHSGGWIRALLEEAENERMHLMTFMEVAQPKWYERALVMAVQGVFFNAYFLGYIISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI ENVPAPAIAIDYWRLPADATLRDVVVVVRADEAHHRDVNHLASDIHYQGQELKETPAPIGYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Lus10035670 [exp]	0	1
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10008742 [exp]	1.0	0.9883
					Lus10000527 [exp]	2.0	0.9861
AT1G11925			Stigma-specific Stig1 family p...		Lus10020831 [exp]	3.7	0.9875
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10032150 [exp]	4.7	0.9800
AT5G60335			Thioesterase superfamily prote...		Lus10031971 [exp]	6.0	0.9863
AT1G14550			Peroxidase superfamily protein...		Lus10024205 [exp]	6.2	0.9792
AT1G17860			Kunitz family trypsin and prot...		Lus10007902 [exp]	7.9	0.9847
AT1G14550			Peroxidase superfamily protein...		Lus10024209 [exp]	9.2	0.9799
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10010391 [exp]	9.6	0.9748
					Lus10002336 [exp]	11.3	0.9787

Compare expression of checked genes

Lus10035670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.