Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23640 1363 / 0 HGL1 heteroglycan glucosidase 1 (.1.2) AT5G63840 245 / 5e-68 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) AT5G11720 206 / 6e-55 Glycosyl hydrolases family 31 protein (.1) AT3G45940 196 / 1e-51 Glycosyl hydrolases family 31 protein (.1) AT1G68560 174 / 1e-44 AXY3, TRG1, XYL1, ATXYL1 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033490 [exp] 226 / 3e-61 AT5G63840 1444 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10020887 [exp] 220 / 3e-59 AT5G63840 1435 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10038408 [exp] 204 / 3e-54 AT5G11720 1150 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10008067 [exp] 197 / 1e-51 AT5G11720 1072 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10035020 [exp] 188 / 5e-49 AT1G68560 1238 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10041457 [exp] 185 / 9e-48 AT1G68560 1455 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10034315 [exp] 181 / 1e-46 AT1G68560 1454 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035019 [exp] 167 / 3e-42 AT1G68560 1195 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10000779 [exp] 89 / 2e-18 AT5G11720 473 / 1e-160 Glycosyl hydrolases family 31 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G129600 [exp] 1425 / 0 AT3G23640 1463 / 0.0 heteroglycan glucosidase 1 (.1.2) Potri.005G069000 [exp] 228 / 4e-62 AT5G63840 1405 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.007G100000 [exp] 228 / 5e-62 AT5G63840 1427 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.011G154200 [exp] 213 / 5e-57 AT5G11720 1189 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.001G442800 [exp] 207 / 3e-55 AT5G11720 1167 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154500 [exp] 201 / 4e-53 AT5G11720 1215 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154300 [exp] 196 / 2e-51 AT5G11720 1194 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.010G125800 [exp] 191 / 5e-50 AT1G68560 1422 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.008G120000 [exp] 189 / 3e-49 AT1G68560 1465 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01055 [flax] [poplar] Glyco_hydro_31 Glycosyl hydrolases family 31
Representative CDS sequence Show only first row Show all	>Lus10035671 pacid=23147455 polypeptide=Lus10035671 locus=Lus10035671.g ID=Lus10035671.BGIv1.0 annot-version=v1.0 ATGTCCAATTCTCAAAGAGAGGCGACGCAGTTTACTGAGCGCGATGTCCGTTCCGGCGACATGATTTTCCAGCCAATCTTGGAGGAAGGGGTTTTCCGAT TCGATTGCTCTGTGGACGATCGAGCTGTTGCTTTTCCCAGCGTTTCTTTCGTCGATACCAAATATAGGGACATGCCAATTACTAATGCTACTCAAGCTGT TCCTTCATTTATCCCAACTTTTAAGTGTGGTTCCGGAAATCAGTGTGTCCATCTACAGCTGCCCGTTGGTACCTCCTTTTACGGAAGTGGAGAAGTTAGT GGACAGCTTGAGAGGACTGGAAAAAGGGTTTTCACTTGGAACACAGATGCCTGGGGTTATGGTCCAGGAACTACATCCTTGTACCAATCACATCCTTGGG TGTTGGCCATTCTTCCTAATGGAGAGGCAATTGGACTACTTGCAGATACCACTAAGCGCTGTGAGATTGATCTGAGAACTGAATCAATAGTTAGGTTTAT TGCCCCATCCTCCTATCCCATCATATCTTTTGGCCCATTTCCATCACCAACAGCTGTTTTGAGATCTCTGTCACGTGCGATTGGTACGGTTTTCATGCCT CCAAAGTGGTCATTAGGCTATCAGCAATGCCGCTGGAGCTATGATTCTGCCAAGAGAGTTCGAGAGGAACGCTTTCCAGATCCACGTTCTTTAACAGGAG ATCTCCATGATATGGGTTTCAAAGCAATCTGGATGCTTGACCCGGGAATCAAGTGTGAAGAGAGTTACTTTGTATATGATAGCGGCTCTAAAAGTGATGT TTGGGTTCAGAATGCAAATGGGCAGCCATATATTGGGGAGGTGTGGCCTGGACCTTGTGTTTTCCCAGACTTCACACAGTCCAAAGTTCGTTCCTGGTGG GCTAGTTTAGTTAGGGAGTTTGTTTCCAATGGTGTTGATGGTATATGGAATGACATGAACGAGCCTGCAGTTTTCAAAACTGTAACAAAGACAATGCCCG AAAGCAACATCCATAGAGGAGATGATGAACTTGGAGGTTGCCAGAATCACTTGCAATATCACAATGTGTATGGCATGCTCATGGCAAGATCAACATTTGA AGGGATGAAATTATCAAATGATAATAAGCGCCCTTTTGTTCTTACCAGAGCTGGATTTATCGGTAGTCAAAGATATGCGGCCACTTGGACGGGGGATAAT CTTTCCAACTGGGAGCATTTGCAGATGTCTATCCCAATGGTACTTCAATTGGGGCTCAGTGGTCAGCCACTTTCAGGACCTGACCTTGGTGGGTTTGCTG GAAATGCAACGCCGAAACTCTTTGGGAGGTGGATGGGCATAGGTTCGTTGTTTCCTTTTTGCCGTGGACATTCAGAAATGGGCACAACTGACCATGAGCC ATGGTCTTTTGGGGAAGAGTGTGAAGAGGTTTGCCGCCTTGCATTGAGAAGGCGTTACCGACTTCTACCATACATATATACTCTCTTCTATATGTCTCAC ACGATGGGTAGTCCTGTGGCAACCCCTACACTTTTTGCTGATCCCAAAGATCCCAGCTTAAGGAAACTTGAGAATTCTTTCCTGCTGGGTTCACTTCTTG TCTGCTCAAGCACTGCTTCTGACCAGACAACTAATGAAGTGAAGCATGTTCTTCCTGGAGGAGTTTGGATGAGATTTGATTTTGATGATGCACATCCGGA TTTACCGACTTTATACTTGCAAGGTGGATCAATAATTCCTTCTAGTCGTCCTTATCAGCATGTTGGTGAATCTAATAAATCAGATGACCTGACCGTCCTG GTAGCTTTAAACGAAAATGGGAAAGCAGAAGGCCAATTATTTGAAGATGATGGTGATAGTTATGATTTCACAAAGGGGGAGTATCTGCTGACACATTATG TTGCAGAACTGAAATCTTCAGTTGTTACGGTTAAGGTTTCGAAAACAGAAGGATTATGGCAGAGGCCAAGTCGTCGTTTGCATGTATATCTGTTGGTTGG TGGAGGTGCAATGCTTGATGCATGGGGCATGGATGGGGATGCAGTTCAAATTACAATTCCCAGTGAGCATGATATCTCAAAGTTGGTATCCGCAGGCGAT GAACGGTACCGGACTCGTCTAGAAAGTGCCAAGGCAATCCCAGATGTGGGGAAGGATCCTGGGCCAAAGGGAACCGAGCTTTCAAAGACTCCTGTTGAAC TGAAAAGTGGAGACTGGTCTGTTAAAATAGTTCCCTGGATTGGCGGTAGAATTATTTCTATGGAGCATCTTCCATCAGGTACACAGTGGTTACATAGCAG GATTGATATGGATGGATACGAAGAGTACAGTGGTACTGAGTATCGTTCTGCCGGATGTTCTGAAGCATACAGTGTTATCGAGCGTGATCTTGTGCATGCT GGAGAAGGGGAATCCCTGATGTTAGAAGGAGATGTTGGCGGAGGAGTGGTTCTTCAGAGGCATGTGTCCATACTCAAAGATAAGCCAGAAATTCTTCAAA TTGAGTCCGCAATTGTGGCCCGCAGCGTTGGTGCTGGATCTGGAGGATTTTCCAGGCTGGTTTGCTTGAGGGTGCACCCGACTTTTACCTTATTGCACCC AACTGAAACATTCATCTCCTTCACCGCTGTTGATGGCTCAAAGCATGAGATTTGGCCAGACGCCAACGACCAGACCTATCAAGGGGATCATCGTCCTAAC GGAGAATGGATGCTGGTGGACAGATGTTCAGGTTTGGGGCTGGTTAACCGATTCAATGTGAATGAGGTATACAAGTGTTACATTCATTGGGGAACTGGAA CCGTTAATCTGGAGCTATGGTCAGCGGATAGCCCGGTGTCGAAAGAATCGCCTCTTACGGTCTCTCATCGATACCAGGTAGCAAGAGTAACTGCCTCTTA G
AA sequence Show only first row Show all	>Lus10035671 pacid=23147455 polypeptide=Lus10035671 locus=Lus10035671.g ID=Lus10035671.BGIv1.0 annot-version=v1.0 MSNSQREATQFTERDVRSGDMIFQPILEEGVFRFDCSVDDRAVAFPSVSFVDTKYRDMPITNATQAVPSFIPTFKCGSGNQCVHLQLPVGTSFYGSGEVS GQLERTGKRVFTWNTDAWGYGPGTTSLYQSHPWVLAILPNGEAIGLLADTTKRCEIDLRTESIVRFIAPSSYPIISFGPFPSPTAVLRSLSRAIGTVFMP PKWSLGYQQCRWSYDSAKRVREERFPDPRSLTGDLHDMGFKAIWMLDPGIKCEESYFVYDSGSKSDVWVQNANGQPYIGEVWPGPCVFPDFTQSKVRSWW ASLVREFVSNGVDGIWNDMNEPAVFKTVTKTMPESNIHRGDDELGGCQNHLQYHNVYGMLMARSTFEGMKLSNDNKRPFVLTRAGFIGSQRYAATWTGDN LSNWEHLQMSIPMVLQLGLSGQPLSGPDLGGFAGNATPKLFGRWMGIGSLFPFCRGHSEMGTTDHEPWSFGEECEEVCRLALRRRYRLLPYIYTLFYMSH TMGSPVATPTLFADPKDPSLRKLENSFLLGSLLVCSSTASDQTTNEVKHVLPGGVWMRFDFDDAHPDLPTLYLQGGSIIPSSRPYQHVGESNKSDDLTVL VALNENGKAEGQLFEDDGDSYDFTKGEYLLTHYVAELKSSVVTVKVSKTEGLWQRPSRRLHVYLLVGGGAMLDAWGMDGDAVQITIPSEHDISKLVSAGD ERYRTRLESAKAIPDVGKDPGPKGTELSKTPVELKSGDWSVKIVPWIGGRIISMEHLPSGTQWLHSRIDMDGYEEYSGTEYRSAGCSEAYSVIERDLVHA GEGESLMLEGDVGGGVVLQRHVSILKDKPEILQIESAIVARSVGAGSGGFSRLVCLRVHPTFTLLHPTETFISFTAVDGSKHEIWPDANDQTYQGDHRPN GEWMLVDRCSGLGLVNRFNVNEVYKCYIHWGTGTVNLELWSADSPVSKESPLTVSHRYQVARVTAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23640		HGL1	heteroglycan glucosidase 1 (.1...		Lus10035671 [exp]	0	1
AT5G41810			unknown protein		Lus10003901 [exp]	5.8	0.9670
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10006461 [exp]	6.3	0.9624
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	7.1	0.9629
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	8.0	0.9656
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Lus10019850 [exp]	11.0	0.9443
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10011056 [exp]	12.1	0.9396
AT5G47530			Auxin-responsive family protei...		Lus10010498 [exp]	12.5	0.9339
AT1G14160			Uncharacterised protein family...		Lus10037160 [exp]	14.3	0.9621
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	16.6	0.9610
AT1G61590			Protein kinase superfamily pro...		Lus10033294 [exp]	17.4	0.9559

Compare expression of checked genes

Lus10035671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.