Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31720 84 / 8e-20 Protein of unknown function (DUF1218) (.1) AT4G19370 77 / 4e-17 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037256 [exp] 236 / 2e-78 AT1G31720 94 / 2e-23 Protein of unknown function (DUF1218) (.1) Lus10033286 [exp] 130 / 7e-38 AT4G19370 119 / 6e-34 Protein of unknown function (DUF1218) (.1) Lus10034746 [exp] 96 / 1e-24 AT1G31720 103 / 7e-28 Protein of unknown function (DUF1218) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235000 [exp] 131 / 3e-38 AT1G31720 131 / 8e-39 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10035672 pacid=23147416 polypeptide=Lus10035672 locus=Lus10035672.g ID=Lus10035672.BGIv1.0 annot-version=v1.0 ATGGAGAAGCAGAGAATTGGGTTGCTCTTCTTCCTCGCCATTGTCATCTCCCTCGCCCTCGCATCCTTTGTCTCCTCCGTCATCGCCGAGACCAAGAAAG CCAAGAAGAAGGATGTGAAACTGGTGAATGCGATGTGTTACATGCCGGAGAGCAATGCGTTCGGGTTCGGAATGGCGGCAATCGCGTGTCTAGTAGTTGC GCATACTCTTACCAACTTGGTTATATGCGCCAACTTCTTCTTCGTCTCCTTTTCGTGTTCTTCGCCCAACAAGCGGCCGGCTGTCACCACTGATCATCCT CTGCCTCCTTCCAATTCCACCGTCTCTGCTTCTTCTTCTTCTTTGTCTTCTTCCGCCAAGTCCAGCCGGAGTAAGCTTACTATTCCGGCCATCCTCCTCA TGCTTCTCTCCTGGGCGAGTTTTGGGATGGCAGCAGTGCTGTTAGGGGGAGCGACAAGCATGAGCGGAACTCAGCCGTATGGGAATGGCTGGCTCGACGG AAGATGCTACGTCGTTAAGGATGGGATCTACGCCGGCTCTGGGGTTCTTACGCTTCTCTCCACAGCCGCCGCCCTTGCCTCCGCACTTGTCACCGTTCGG AAAGCCCATTCTGAACCTGGTCCCAGAGTGCATGCACAAGCTGCTGCTGCTGTGGCAACTGCTTCATGA
AA sequence Show only first row Show all	>Lus10035672 pacid=23147416 polypeptide=Lus10035672 locus=Lus10035672.g ID=Lus10035672.BGIv1.0 annot-version=v1.0 MEKQRIGLLFFLAIVISLALASFVSSVIAETKKAKKKDVKLVNAMCYMPESNAFGFGMAAIACLVVAHTLTNLVICANFFFVSFSCSSPNKRPAVTTDHP LPPSNSTVSASSSSLSSSAKSSRSKLTIPAILLMLLSWASFGMAAVLLGGATSMSGTQPYGNGWLDGRCYVVKDGIYAGSGVLTLLSTAAALASALVTVR KAHSEPGPRVHAQAAAAVATAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19370			Protein of unknown function (D...		Lus10035672 [exp]	0	1
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002979 [exp]	4.5	0.9005
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10032118 [exp]	5.5	0.8907
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020939 [exp]	6.0	0.8820
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Lus10036882 [exp]	7.1	0.8773
AT5G44670			Domain of unknown function (DU...		Lus10038387 [exp]	7.1	0.8983
AT5G44670			Domain of unknown function (DU...		Lus10036247 [exp]	7.9	0.8975
AT3G20300			Protein of unknown function (D...		Lus10002334 [exp]	9.7	0.8543
AT3G10300			Calcium-binding EF-hand family...		Lus10035435 [exp]	9.8	0.8575
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10037377 [exp]	9.8	0.8938
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10004759 [exp]	10.1	0.8103

Compare expression of checked genes

Lus10035672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.