Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19380 763 / 0 Long-chain fatty alcohol dehydrogenase family protein (.1) AT3G23410 545 / 0 ATFAO3 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) AT4G28570 498 / 8e-167 Long-chain fatty alcohol dehydrogenase family protein (.1) AT1G03990 482 / 3e-160 Long-chain fatty alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037257 [exp] 1255 / 0 AT4G19380 765 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10022903 [exp] 526 / 1e-177 AT4G28570 837 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10003621 [exp] 525 / 8e-177 AT4G28570 853 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10024922 [exp] 520 / 3e-175 AT4G28570 833 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10008239 [exp] 519 / 2e-174 AT4G28570 852 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10011800 [exp] 332 / 6e-107 AT3G23410 527 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Lus10011801 [exp] 159 / 3e-43 AT4G28570 243 / 3e-74 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10021165 [exp] 103 / 2e-24 AT4G28570 148 / 8e-41 Long-chain fatty alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G234900 [exp] 891 / 0 AT4G19380 864 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.010G069100 [exp] 566 / 0 AT3G23410 851 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.008G169300 [exp] 545 / 0 AT3G23410 855 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.002G259700 [exp] 172 / 9e-46 AT1G03990 300 / 5e-93 Long-chain fatty alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10035673 pacid=23147642 polypeptide=Lus10035673 locus=Lus10035673.g ID=Lus10035673.BGIv1.0 annot-version=v1.0 ATGATGACTGGTAATGATATAACGGAGAGGGAGATGAAGTCGCTCATTTCTATCTGCGACACCTTCTTTCCGTCCATCAACAACCACCACCACCAATCGG CCGTCGTTGCCGAGTTCTACCAGACGTCGGCGTCCATGGCCGGAACTCCTCAAAGGATAGGAAGGTTGATCAGTGGGAGACTTAAGCACCCAAAGGTATG GCTAGTAAGACTATCACTGTGGCTGCTGTCCACGTGGATCGGGACCTTCATCCTATGTGGCAGGCTCAGCATTTCATCTCGTTTCCCATTCATCTTAAGT TTCCCTGAAATCCCTCTTGAGAAAAGGGAACAAATCGTCCTCTCATGGTCTCAGAGCATCTTCTTCCACCTCAGGATGCTCTTCAAGGCTTTCAAACTCC TCATTCCACTTGTCTTCTTCTCCCAGGTTGACGAGAAGAATGAGAATCCGTCATGGGAAGCAATTGGTTATCCAGGATCAGATCCTGCATACAAAACTGC AGAACAACATCCCCCAAATGAACCTCTCCCAGCTGCCAATATCACCAACACTAAAGAACATCCCCACGGACCACTCCACAGAGGGATCATCAACACAAAT CTCCCAACGAGTACAATCACAGAATCCCTACAAAAATCGGGATTCAAAGTCTCCGCCACCACTACCGGATCGATCAACATCAAATGTGATGCTGTAGTAG TGGGCTCCGGCTCGGGTGGTGGCGTGGTTGCAGGAATGCTAGCAAACGCCGGATTCAAAGTGCTCGTCCTGGAGAAAGGAAGTTACTTTGCCAGAAGCAA CCTCTCGCTACTCGAAGGCCCTTCCATGGACCAAATGTACCTCTCAGGAGGCCTCCTAGCCACCGACAACATGAGCTTCGTAGTCCTCGCTGGCTCGACA GTGGGAGGAGGCTCGGCTATCAACTGGTCCGCCTCCATCAAAACTCCACACAAGGTTACCAAAGAGTGGAGCCATGAAAACCAACTGGAGCTGTTTGAGA GCAAGATGTATAGAGAAGCAATGGAGGTGGTTTGCCGGAGGATGGGAGTTCATACCAAAGTCGATGTGGAGGAAGGACTCAACAATGCCGTCTTGAGGAA AGGGTGCCAGCAATTAGGGTATCCAGTTGACGACATCCCGAGAAACTCAGACGCGAAACACGGATGTGGATGGTGTTGCTTCGGCTGTAGAGAAGGGCGC AAAATGGGGACTTCAGAGACATGGTTGGTGGACTTGGTTAATTCAGGGAATGGTGTGATTCTTCCTGGATGCGAAGCAGTTAAAGTCCTCCACGAATCAA GAAATGGAAGGAAAATAGCAACTGGGGTTGTGTTCGAATCGATGACCAAGGAAATATTTATGGTGGAATCGAAAGTTACCGTAGTGGCTTGCGGAGCTCT AAGCACTCCACCATTGCTGCGGAGAAGCGGATTAAGGAATCGTCACATTGGGGAGAATCTCCACCTCCACCCGGTGACAATGGCGTGGGGATACTTCCCT GATGAAGAAGTAGGGAAACAGAGGAGCTACGAAGGTCCGATAATGACGGCGATGTCGAAGGTTAGTGAGGACGAATCAGATGATGATGATGGTCTCTATG GGGCAATTATACAAACTCCTTCTCTGCATCCCGGAATGTTCTCCAGTTTCATGCCGTGGGTGTCCGGATACGATTTGAAAAGGCGTATGACTAGGTTCTC GCGAACTGCGCACATATTCACATTGGCCAGGGACAGAGGGTCGGGTGCTGTGAAAGATTGCTCCGATAACATTAGCTACGAGATGGAAGAGTCGGACGAG AGGAATCTGCAGAAGGGGGTGGAGAAGATACTGCGGATTCTGGCTGCGGCGGGAGCGGAAGAAATAGGGACGCATAATTTGGGCGGGAAGAGCATCAATG TGAAGGAAGTTGGGAGCGAGGAGTTGGAGAGGTTCGTGAAGGAGGAGAGCAGGAGGCCGATAAGAGGACTGCGGACGCAGCTGGGCTCCGCGCATCAGAT GGGGAGCTGCCGGATGGGGGTGGATCCGGAGGTGTCGGTGGTGAAGGAGACAGGGGAGACGTGGGAGGTGGAAGGGCTGTACGTGGCGGATTCGAGCGTT TTCCCGACGGCGCTTGGGGTGAATCCGATGGTCACTGTCCAGGCGATTGCTTATTGCACGGCTCTCTCGGTTCTTGAGCGTCTCCGGAGGAAGAAACTGT GCTCTGAGTTTTAA
AA sequence Show only first row Show all	>Lus10035673 pacid=23147642 polypeptide=Lus10035673 locus=Lus10035673.g ID=Lus10035673.BGIv1.0 annot-version=v1.0 MMTGNDITEREMKSLISICDTFFPSINNHHHQSAVVAEFYQTSASMAGTPQRIGRLISGRLKHPKVWLVRLSLWLLSTWIGTFILCGRLSISSRFPFILS FPEIPLEKREQIVLSWSQSIFFHLRMLFKAFKLLIPLVFFSQVDEKNENPSWEAIGYPGSDPAYKTAEQHPPNEPLPAANITNTKEHPHGPLHRGIINTN LPTSTITESLQKSGFKVSATTTGSINIKCDAVVVGSGSGGGVVAGMLANAGFKVLVLEKGSYFARSNLSLLEGPSMDQMYLSGGLLATDNMSFVVLAGST VGGGSAINWSASIKTPHKVTKEWSHENQLELFESKMYREAMEVVCRRMGVHTKVDVEEGLNNAVLRKGCQQLGYPVDDIPRNSDAKHGCGWCCFGCREGR KMGTSETWLVDLVNSGNGVILPGCEAVKVLHESRNGRKIATGVVFESMTKEIFMVESKVTVVACGALSTPPLLRRSGLRNRHIGENLHLHPVTMAWGYFP DEEVGKQRSYEGPIMTAMSKVSEDESDDDDGLYGAIIQTPSLHPGMFSSFMPWVSGYDLKRRMTRFSRTAHIFTLARDRGSGAVKDCSDNISYEMEESDE RNLQKGVEKILRILAAAGAEEIGTHNLGGKSINVKEVGSEELERFVKEESRRPIRGLRTQLGSAHQMGSCRMGVDPEVSVVKETGETWEVEGLYVADSSV FPTALGVNPMVTVQAIAYCTALSVLERLRRKKLCSEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19380			Long-chain fatty alcohol dehyd...		Lus10035673 [exp]	0	1
					Lus10036436 [exp]	1.7	0.9401
AT3G53810			Concanavalin A-like lectin pro...		Lus10004980 [exp]	2.0	0.9230
					Lus10027917 [exp]	2.4	0.9214
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10013132 [exp]	7.1	0.8882
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10027120 [exp]	7.9	0.8618
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10007594 [exp]	8.9	0.9130
AT1G67560		ATLOX6, LOX6	Arabidopsis thaliana lipoxygen...		Lus10006429 [exp]	11.5	0.9204
					Lus10029450 [exp]	16.2	0.8608
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Lus10043433 [exp]	23.5	0.8615
AT4G17486			PPPDE putative thiol peptidase...		Lus10043293 [exp]	29.7	0.8217

Compare expression of checked genes

Lus10035673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.