Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45320 174 / 6e-56 unknown protein AT3G26350 50 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037259 [exp] 345 / 3e-123 AT5G45320 182 / 2e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G046000 [exp] 231 / 5e-78 AT5G45320 164 / 3e-51 unknown protein Potri.004G234500 [exp] 210 / 8e-70 AT5G45320 173 / 7e-55 unknown protein Potri.011G165500 [exp] 53 / 1e-08 AT4G26490 275 / 3e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G468400 [exp] 52 / 2e-08 AT4G26490 265 / 5e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.010G049000 [exp] 49 / 3e-07 AT3G26350 189 / 1e-56 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035675 pacid=23147467 polypeptide=Lus10035675 locus=Lus10035675.g ID=Lus10035675.BGIv1.0 annot-version=v1.0 ATGTTCGGCGGCATCGCCGTCTTCATCGGCTACCTAGTCATCCACCCGCGTGTCCCCATCCTCAGCGTCGTCAACGCCCACCTGGACCAGTTCCAATACG ACTACGCGGGGACACTGATCACCCAGGTGACCGTGATCGTCAGGTCCGAGAACGACAACATGAAGGCCCACTCGTCGTTCTCGGACCTGCACCTGAAACT CATCTTCGGAGGGATGCACATTGCGTACCTCCAGGCCGGGCCTTACGATGTCAGGAAGAACAGCACGATCGACTTCAACTACGTGGTGGTGTCCAAGCCC ATACCGCTGACTCCGGCCCAGATGCAGGACGTTGACGTGATGCTGAAGCAGGACAGGGTGCGGTTCGAGCTGCAGGGGAGCGCTCGGGCTCGGTGGAGAG TCGGACCGTTGGGTTCGATTCGGTTCTGGGATCATTTGAATTGTCGGCTTAATTTCCACCGCTCCAATGGCTCCTATGTCCATTCTCCTTGCACCTCCAG ACCTAAATAA
AA sequence Show only first row Show all	>Lus10035675 pacid=23147467 polypeptide=Lus10035675 locus=Lus10035675.g ID=Lus10035675.BGIv1.0 annot-version=v1.0 MFGGIAVFIGYLVIHPRVPILSVVNAHLDQFQYDYAGTLITQVTVIVRSENDNMKAHSSFSDLHLKLIFGGMHIAYLQAGPYDVRKNSTIDFNYVVVSKP IPLTPAQMQDVDVMLKQDRVRFELQGSARARWRVGPLGSIRFWDHLNCRLNFHRSNGSYVHSPCTSRPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45320			unknown protein		Lus10035675 [exp]	0	1
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10025725 [exp]	4.4	0.7843
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10035692 [exp]	7.9	0.7132
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Lus10016827 [exp]	11.5	0.7303
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Lus10025666 [exp]	22.2	0.7006
AT5G42850			Thioredoxin superfamily protei...		Lus10023026 [exp]	28.6	0.6607
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Lus10020193 [exp]	31.3	0.6604
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10037212 [exp]	43.9	0.6564
AT2G01080			Late embryogenesis abundant (L...		Lus10036163 [exp]	50.8	0.6866
AT3G50940			P-loop containing nucleoside t...		Lus10007391 [exp]	63.4	0.6650
AT4G12040		AtSAP7	stress-associated protein 7, A...		Lus10030150 [exp]	65.7	0.6758

Compare expression of checked genes

Lus10035675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.