Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31650 578 / 0 ATROPGEF14, ROPGEF14 RHO guanyl-nucleotide exchange factor 14 (.1) AT1G79860 309 / 3e-97 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT4G38430 309 / 6e-97 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT5G02010 309 / 6e-97 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT4G00460 303 / 1e-95 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT3G24620 300 / 9e-94 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT1G01700 295 / 3e-92 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT4G13240 295 / 6e-92 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT3G55660 292 / 7e-90 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT5G05940 291 / 2e-89 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037260 [exp] 1033 / 0 AT1G31650 563 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10033282 [exp] 798 / 0 AT1G31650 645 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10034742 [exp] 773 / 0 AT1G31650 634 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Lus10009874 [exp] 308 / 5e-96 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10000399 [exp] 306 / 4e-95 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021234 [exp] 302 / 2e-94 AT4G38430 525 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10035865 [exp] 297 / 1e-93 AT1G79860 606 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10040248 [exp] 302 / 2e-93 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10025797 [exp] 300 / 5e-93 AT1G79860 608 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G127300 [exp] 692 / 0 AT1G31650 667 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Potri.003G106400 [exp] 682 / 0 AT1G31650 667 / 0.0 RHO guanyl-nucleotide exchange factor 14 (.1) Potri.002G159700 [exp] 320 / 4e-102 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.009G140100 [exp] 321 / 4e-101 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.004G179742 [exp] 318 / 1e-99 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.005G247100 [exp] 313 / 3e-98 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.014G084200 [exp] 310 / 4e-98 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.003G052600 [exp] 311 / 1e-97 AT1G79860 637 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Potri.008G062000 [exp] 309 / 5e-96 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.001G183800 [exp] 306 / 1e-95 AT1G79860 637 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10035676 pacid=23147582 polypeptide=Lus10035676 locus=Lus10035676.g ID=Lus10035676.BGIv1.0 annot-version=v1.0 ATGGTAATGCGAAGCAGACTTGCTTGCTGCACTTGGGATAGAAGAGGGATTAGTATCGACTTCGATCAAGACCACACCAGTATTATGACTTATGATGGCC TGGAGAGCTGCATTCAAAACAATCAATCCTATGAACATGAAAGTGGGACAAGTACTGGAGTCGGTGGTGAACGTGTAAGCGACTCCTTTGATGATTGTGC TTCCCCCAGCTGCTCATCCAGCAAGGATGTTACCGGAATCGGATCTTTCTCTTCGAAATGGTTTGGAGTTAAAAGGGATGGTGATGATGATCAGACTTCT GATGACTGGGAGTTCCCTCACAAGTTCTATGTCAAAGACAAACCACCGTACGTGCTTGAGGTTTCAGATGTCGAGACAATGAAAGAGAAATTCGCTAAGC TTTTGTTGGGCGAAGATATAACCGGTGGGAGTAAAGGCATCACTGCTGCGTTAGCATTGTCGAATGCGATTACGAGCCTGGCAGCATCTGTGTTTGGAGA GATGTGGAAGTTAGAGCCATTGCCGGAAGAGAACAAGAACAAATGGAGAAGGGAAATGGACTGGTTGCTCTCTCCTACTAACTATATGGTTGAGTTGGTT CCTGCTAAGCAAAATGGTGTCAATGGCCGAACGTTGGAGATAATGACTCCCAAAGCTCGTGCAGACATCCACATGAATCTTCCTGCACTTACAAAGCTGG ACTCTATGCTAATCGAGACATTGGATTCAATGGTGAAATCTGAGTTTTGGTACGCAGAAGTAGGCAGCAGAGCCGAGGGACGAAACAAGAGCACTGGGGA GAGCAAGAGGTGGTGGCTTCCATTGCCACAAGTTCCAACAGCTGGACTTTCCGACTCGGAAAGGAAGAAGCTGATCTATAAATCCAGGATTGTATATCAA GTATTCAAGGCTGCTAGAGCCATCAACTGTAGCATTCTGCTTGAAATGCAGGTCCCAACTGTTATTAAGGATGCACTTCACAAGTCCGGAAGGGAAAATC TTGGGGAGGAACTCTACAAGTTATTGACAAAAGCATCATCAGCCACTACAGACGAAATGCTGAAGTCACTTAATCTGCAATCTGAACACAATGTGCTTGA GGTCGTTAACAAGTTGGAAGTTTTCATATTGGGGTGGAAAGAGAGAAGCAAAGCAGCACAAGTTGGCAAGAAATCCCCGAATAGAACATCTGAGATTGAT AAGGTGCTAGCTAGTATAGCGGAAGGCCTTGTCCAGCAACTGAAGGCCAGACATCCAAACCTTCCTCATACATTTCTTGACTCTACCAAAATCCAATATG GCAAGGATGTTGGACACGCAATACTGGAAGCCTATTCACGGGTTCTGGGGAATCTGGCATGGAGCATATTGACAAGAATAGCAGACATTTTGCAAGAAGA CAATGTGAACAATCCGAATTCTCCAGGGACTACGAGTTGCAGAAGCGATATTGCAGGGTTGTCTGATATCATGTCCACTGGTGTGAAACTGCGTGATGCC GAATATGATGAGGCGAACAAGGTGGAGGAGCGGTTGAGGTATTCGGATGCAAGCAATTCAGTTTCGGATTGGGAATTCTGCCATAGCGAACCAAAATCGA GCTCATCTGCTAATGAAACTCCTAGCAGAAGCAGAGTATGGTGCATTGGCGGAGAGGCTTTGGATTCTGCGCAAGCTGCTCTCCAAGCATTACACGGGCG TCCTTGTCCGGAGCTTGGAGGACGTTATTTGCACATTCGTACTTCTGTGCTTCACCCGACTGGCAAGAACCAAGTCAACCAAGCAATTCCAGTATCCTAT CTGGCTTCAGAAGTTAATATTCCAGGCCTTTACTTGCTGCACGACTTCGTCTCTGTAGAAGAAGAGCAAGTACGACGAGGTCCCTGCCAGTGTGATTTTC CCCATACTGTGATTCTCAGCCATGATGAAAAAGTTAGTTTCACTCTGCTTGAGAATGTAGCTGAAGATTCCTCTACATGGATGATGCACTTTATGGCCAT GATGATGGAAATGGATAAACTGACATGGAGCGATAGGACTAACTTGATGGTGATATGGCAACATAAAATCAGGTGA
AA sequence Show only first row Show all	>Lus10035676 pacid=23147582 polypeptide=Lus10035676 locus=Lus10035676.g ID=Lus10035676.BGIv1.0 annot-version=v1.0 MVMRSRLACCTWDRRGISIDFDQDHTSIMTYDGLESCIQNNQSYEHESGTSTGVGGERVSDSFDDCASPSCSSSKDVTGIGSFSSKWFGVKRDGDDDQTS DDWEFPHKFYVKDKPPYVLEVSDVETMKEKFAKLLLGEDITGGSKGITAALALSNAITSLAASVFGEMWKLEPLPEENKNKWRREMDWLLSPTNYMVELV PAKQNGVNGRTLEIMTPKARADIHMNLPALTKLDSMLIETLDSMVKSEFWYAEVGSRAEGRNKSTGESKRWWLPLPQVPTAGLSDSERKKLIYKSRIVYQ VFKAARAINCSILLEMQVPTVIKDALHKSGRENLGEELYKLLTKASSATTDEMLKSLNLQSEHNVLEVVNKLEVFILGWKERSKAAQVGKKSPNRTSEID KVLASIAEGLVQQLKARHPNLPHTFLDSTKIQYGKDVGHAILEAYSRVLGNLAWSILTRIADILQEDNVNNPNSPGTTSCRSDIAGLSDIMSTGVKLRDA EYDEANKVEERLRYSDASNSVSDWEFCHSEPKSSSSANETPSRSRVWCIGGEALDSAQAALQALHGRPCPELGGRYLHIRTSVLHPTGKNQVNQAIPVSY LASEVNIPGLYLLHDFVSVEEEQVRRGPCQCDFPHTVILSHDEKVSFTLLENVAEDSSTWMMHFMAMMMEMDKLTWSDRTNLMVIWQHKIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10035676 [exp]	0	1
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10037260 [exp]	4.5	0.8408
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10016390 [exp]	4.5	0.8253
AT4G15820			unknown protein		Lus10034169 [exp]	8.7	0.7824
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10013319 [exp]	11.4	0.7994
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10004253 [exp]	11.7	0.8242
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10039148 [exp]	14.5	0.8322
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10010473 [exp]	18.7	0.8292
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10039594 [exp]	20.3	0.8007
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10032522 [exp]	23.4	0.8130
					Lus10016908 [exp]	24.0	0.7751

Compare expression of checked genes

Lus10035676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.