Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35410 225 / 5e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G09040 129 / 3e-35 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G24770 122 / 3e-32 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G50250 120 / 8e-32 CP31B chloroplast RNA-binding protein 31B (.1) AT3G52380 117 / 3e-30 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT1G60000 114 / 7e-30 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G37220 107 / 8e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52150 90 / 7e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G01080 87 / 2e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17640 72 / 5e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037265 [exp] 553 / 0 AT2G35410 234 / 1e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10029372 [exp] 117 / 2e-30 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10016174 [exp] 115 / 1e-29 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10041138 [exp] 114 / 1e-29 AT4G09040 201 / 7e-63 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10020945 [exp] 112 / 7e-29 AT4G09040 219 / 6e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10008721 [exp] 111 / 2e-28 AT4G09040 218 / 8e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002222 [exp] 109 / 1e-27 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023191 [exp] 108 / 3e-27 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023723 [exp] 108 / 4e-27 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G141300 [exp] 265 / 9e-88 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G090200 [exp] 124 / 6e-33 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.005G161000 [exp] 123 / 1e-32 AT4G09040 219 / 5e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G340800 [exp] 117 / 6e-31 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.015G086500 [exp] 117 / 2e-30 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.016G090700 [exp] 112 / 6e-29 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G172100 [exp] 112 / 8e-29 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 105 / 3e-26 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G202000 [exp] 99 / 1e-23 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G068300 [exp] 99 / 2e-23 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10035678 pacid=23147569 polypeptide=Lus10035678 locus=Lus10035678.g ID=Lus10035678.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCTCTGCATACGCCCTTCTCTCGCTTCTCGGTTAACGACTCTCTAACTCTTGCTTCCTCTTCCTACTCTCCTTCTAATATCCAATCAGTTC CCAGAACCTTGCATTCTGCTCTGTCCTTTAAGCACTACACTGCCAGCTCCACCGGCTATCTTCTCCACCAAAGCTGCCCATTTTCCCCTCTCACGGTCAA TCTCCCAGCAACCACAGACCCGCGCCGGAGACGTTTCTGTGCGGTGCAGGAGACGGCAGTACTGGAGACTGAATCGGATAAACACGCGGAGACAGAAACG GAAGTGGAAAATCAGAAGAGGAAGCTATTTGTGCTCAATTTGTCATGGACCTTATCTGTTGCAGACATCAAACAACTCTTCGGCCAGTGTGGAACTGTTA CGGATGTTGAGTTCATAAAGCGAGATAATGGGAAGAGCAAGGGTTATGCGTTTGTGACGATGGCTTCTGGAGCTGAAGCTCAAGCTGTTGTTGATAAATT CCACTCTCAGGAAGTGGAAGGGAGAGTTGTGACTGTGGAGTTTGCTAAGGGATTTAGGAGGAAGCGTCCTCCTACTCAGACCCCTAGTTCAGAGTCATCT CACAAGCTCTACGTGGCAAATCTGGCCTGGAAGGTCCGAGGCAGTCATCTAAAAGAGTTTTTCTCAACTGAAGCCAAACCAGTTACATCCCGAGTTGTAT TTGAAAATGGTGCTGGGGGGAGGTCAGCAGGATATGGGTTCGTCTCATTTGGCTCAAAGGAAGAAGCAGAGGCTGCCATTTCAGCTTTTGATGGCAAGGA GCTAATGGGACGACCTATTCGTCTGAAATTCAGCGAACCAAAAGGAGCAGATAACTCAGAAAGCCAAACGCAGGAGACTGAAAACTCGGAGGAGGCAAAT GACTCGGATAGCCAAACGGAAGAGACAGAAGACTTGGAGTAG
AA sequence Show only first row Show all	>Lus10035678 pacid=23147569 polypeptide=Lus10035678 locus=Lus10035678.g ID=Lus10035678.BGIv1.0 annot-version=v1.0 MAAALHTPFSRFSVNDSLTLASSSYSPSNIQSVPRTLHSALSFKHYTASSTGYLLHQSCPFSPLTVNLPATTDPRRRRFCAVQETAVLETESDKHAETET EVENQKRKLFVLNLSWTLSVADIKQLFGQCGTVTDVEFIKRDNGKSKGYAFVTMASGAEAQAVVDKFHSQEVEGRVVTVEFAKGFRRKRPPTQTPSSESS HKLYVANLAWKVRGSHLKEFFSTEAKPVTSRVVFENGAGGRSAGYGFVSFGSKEEAEAAISAFDGKELMGRPIRLKFSEPKGADNSESQTQETENSEEAN DSDSQTEETEDLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10035678 [exp]	0	1
					Lus10038585 [exp]	1.4	0.9481
AT3G08740			elongation factor P (EF-P) fam...		Lus10022740 [exp]	1.4	0.9571
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10030298 [exp]	3.5	0.9440
AT3G12930			Lojap-related protein (.1)		Lus10002544 [exp]	6.5	0.9297
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10020325 [exp]	7.1	0.9403
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Lus10029446 [exp]	9.8	0.9198
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10024985 [exp]	10.6	0.9249
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10020797 [exp]	10.7	0.9199
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	11.7	0.9448
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Lus10005945 [exp]	12.0	0.9130

Compare expression of checked genes

Lus10035678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.