Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45300 849 / 0 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT2G45880 580 / 0 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT4G00490 528 / 0 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT2G32290 362 / 4e-116 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT4G15210 353 / 5e-115 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT4G17090 333 / 1e-105 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT3G23920 308 / 2e-95 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT5G55700 279 / 4e-85 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT5G18670 219 / 8e-63 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1) AT4G36780 63 / 2e-10 BZR BEH2 BES1/BZR1 homolog 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018842 [exp] 554 / 0 AT2G45880 879 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10037846 [exp] 498 / 2e-169 AT4G00490 684 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10030392 [exp] 490 / 3e-166 AT4G00490 660 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10017820 [exp] 390 / 2e-128 AT2G45880 551 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10018491 [exp] 353 / 5e-113 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 352 / 5e-113 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039701 [exp] 352 / 2e-111 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10001087 [exp] 327 / 6e-103 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10011035 [exp] 325 / 1e-102 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G106500 [exp] 915 / 0 AT5G45300 831 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Potri.014G083700 [exp] 602 / 0 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.002G159300 [exp] 588 / 0 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.014G083800 [exp] 555 / 0 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.017G040800 [exp] 359 / 6e-115 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.001G148900 [exp] 326 / 6e-103 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 317 / 2e-99 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.008G174100 [exp] 308 / 1e-95 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.010G062900 [exp] 306 / 1e-94 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.003G143500 [exp] 255 / 1e-75 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05687 [flax] [poplar] BES1_N BES1/BZR1 plant transcription factor, N-terminal CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10035679 pacid=23147475 polypeptide=Lus10035679 locus=Lus10035679.g ID=Lus10035679.BGIv1.0 annot-version=v1.0 ATGAGCACCCCCATCGACGACCAAAATCTTCTTCTCGATCCCTACTCCCAACCGCTACCCACCTCGTCCTCAAATTCCCATCAACATCCCCAACCTCAGC TCCGCCGTCCGCGTGGGTTCGCCGCCACCGCCGCCGCCGCTGCCAGTGACGCCAACGGAAGCAACGTTTCCGGCGTCAAGGGGAAACGGGAGCGGGAGAA GGAGAAAGAGCGAACGAAGCTCCGTGAACGCCACCGCCGTGCTATCACTAGCCGGATGCTCGCTGGGCTGAGGCAGTACGGTAACTTCCCTCTCCCTGCG CGTGCGGACATGAACGATGTTCTGGCGTCCTTGGCTCGCGAGGCTGGCTGGACTGTTGAAGCCGATGGCACTACTTATCGCCAGTCTTCTCATCCTCCTC CTCTTCCTCATTTGGCGACCTATGGCGGTGGGGTAAGGGCAGTTCAAAGCCCTACGATATCGGCAACTTCCCTACAGGCTTGCTCTGTGGAAGCTGCTTT GGATGGTCAGCAGCATCCTGCCCTACGAATGGATGGGAGCTTGTCCCCAGCAGCATCTCTTGATTCTGTTGTGATAAGCGACAGAGATACGAGAAATGAA GGCGAAAAATTTCCGAATTCAAGTCCCATTAACTCTGTGGATTGTTTAGATGCTGATCAGCTTATACAGGATGTTCGATCCTCTGAACATGTAAATGATT TCACAGGCTCTCAGTATGTCCCAGTTTATGTTATGCTTGCGAACGGTTTTATCAACAATTTCTCCCAGTTGATTGATTCACAAGGAGTTAGACAGGAGTT AAGTCGCTTGAAGTCTTTGGATGTAGATGGTATTGTTGTGGATTGCTGGTGGGGAATTGTCGAAGCTTGGAGCCCTCAAAAATATATCTGGTCTGGCTAT AGAGAGCTCTTCCACCTCGTCAGGGAATTCAATTTGAAGTTGCAGGTGGTGATGGCATTTCATGAGTATGGAAGAAATGAATCCAGTGAGGTTCTAATCT CTCTCCCTCAATGGGTTTTAGAGATCGGGAAAGAGAACCGAGATATATTCTTTACAGACCGTGAAGGAAGAAGAAGCACTGAATGTCTTTCCTGGGGAGT TGATAAAGAACGAGTTCTAAAAGGGAGAACTGGTATCGAGGTATATTTTGATTTCATGAGAAGCTTCAGGACAGAGTTCGATGACTTGTTCGTTGAGGGT ATCATAACAGCTGTTGAAATCAGTCTTGGAGCTTCTGGAGAACTTAGGTATCCGTCATTCCCGGAAAGAATGGGTTGGAGATATCCAGGTATCGGTGAGT TTCAGTGCTATGATAAGTACCTGCAGCGGAATCTACAGAGAGCAGCTAAATTGCAGGAGCTCTCAGTTTGGGCCGGGAGCCCTGATAATGCTGGCCAATA TAACTCAAGACCACATGAAACTGGTTTCTTTTGTGAGCGAGGTGATTATGACAGCTACTTTGGCCGCTTCTTTCTTCGCTGGTACACACAATTGCTGATA AGTCATGCAGATGATGTACTATCACTTGCTGCCCTTGCGTTTGAGGATACTAAGTTGATTGTTAAGATTCCTGCAGTATATTGGTGGTACAAGACTGCAA GTCATGCTGCTGAGTTAACTGCTGGGTTCTATAACCCTTCAAACCAGGATGGATATTCCCCGGTTTTTAAAGCTTTGAAGAAACACTCTGTGGTAGTGAA GCTTGCATGCCCAGGACTGCAAGTTTCTGGGCATGATGAAGCACTTTCTGATCCAGAAGGCTTGTGTTGGCAGGTTCTAAACGCTGCTTGGGACCGAGGA CTTATGGTTGCCGGCACAAATATGCTCTCGCTCTATGGCAGAGAAGGATATATGAAAGTGGTTGACATGGCAAAGCCGAAGAATGATCCTGATCACCATC ATTTCTCGTTTTTTATATACCAGCAGTCATCGCCTCTGCTGCAAGGAATGGTCTGCTTCCCCGAGTTGGATTACTTCATCAAATGCATGCATGGATGCGT GCTTAAAGTACATAAAACACTTTACAACAATTTTAAAGAATACAAGTCGGTTAATGATATGCGAGGATGTGTTGGAAATATGCACCATGGACTTGACCTT GGTGTGATACCCAAGTTAAGACGGATATGTGGGTTGACGGGAAACCTCACTTTAGCTCAGGAGCTAGCTGAAATTATATTGTGTGTGTTCTCGCATGAGA AATGA
AA sequence Show only first row Show all	>Lus10035679 pacid=23147475 polypeptide=Lus10035679 locus=Lus10035679.g ID=Lus10035679.BGIv1.0 annot-version=v1.0 MSTPIDDQNLLLDPYSQPLPTSSSNSHQHPQPQLRRPRGFAATAAAAASDANGSNVSGVKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPA RADMNDVLASLAREAGWTVEADGTTYRQSSHPPPLPHLATYGGGVRAVQSPTISATSLQACSVEAALDGQQHPALRMDGSLSPAASLDSVVISDRDTRNE GEKFPNSSPINSVDCLDADQLIQDVRSSEHVNDFTGSQYVPVYVMLANGFINNFSQLIDSQGVRQELSRLKSLDVDGIVVDCWWGIVEAWSPQKYIWSGY RELFHLVREFNLKLQVVMAFHEYGRNESSEVLISLPQWVLEIGKENRDIFFTDREGRRSTECLSWGVDKERVLKGRTGIEVYFDFMRSFRTEFDDLFVEG IITAVEISLGASGELRYPSFPERMGWRYPGIGEFQCYDKYLQRNLQRAAKLQELSVWAGSPDNAGQYNSRPHETGFFCERGDYDSYFGRFFLRWYTQLLI SHADDVLSLAALAFEDTKLIVKIPAVYWWYKTASHAAELTAGFYNPSNQDGYSPVFKALKKHSVVVKLACPGLQVSGHDEALSDPEGLCWQVLNAAWDRG LMVAGTNMLSLYGREGYMKVVDMAKPKNDPDHHHFSFFIYQQSSPLLQGMVCFPELDYFIKCMHGCVLKVHKTLYNNFKEYKSVNDMRGCVGNMHHGLDL GVIPKLRRICGLTGNLTLAQELAEIILCVFSHEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45300	BZR	BAM8, BMY2	BETA-AMYLASE 8, beta-amylase 2...		Lus10035679 [exp]	0	1
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Lus10017530 [exp]	10.1	0.7940
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10038727 [exp]	18.7	0.7629
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030177 [exp]	34.9	0.7085
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	35.3	0.7626
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10040030 [exp]	44.6	0.7397
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	47.5	0.7457
AT2G39260			binding;RNA binding (.1)		Lus10023481 [exp]	48.8	0.7113
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10024049 [exp]	52.4	0.7437
					Lus10033677 [exp]	57.2	0.7393
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10020058 [exp]	58.7	0.7062

Compare expression of checked genes

Lus10035679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.