Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45290 265 / 2e-81 RING/U-box superfamily protein (.1.2) AT1G21960 61 / 3e-10 RING/U-box superfamily protein (.1) AT2G27940 61 / 4e-10 RING/U-box superfamily protein (.1) AT1G35625 60 / 4e-10 RING/U-box superfamily protein (.1) AT4G09560 59 / 3e-09 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT4G35480 57 / 3e-09 RHA3B RING-H2 finger A3B (.1) AT5G52150 57 / 3e-09 RING/U-box superfamily protein (.1) AT5G66160 58 / 5e-09 JR700, ATRMR1 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) AT1G71980 57 / 2e-08 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT3G51325 52 / 2e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037267 [exp] 740 / 0 AT5G45290 255 / 2e-78 RING/U-box superfamily protein (.1.2) Lus10001683 [exp] 135 / 3e-34 AT5G45290 155 / 4e-41 RING/U-box superfamily protein (.1.2) Lus10030117 [exp] 135 / 6e-34 AT5G45290 155 / 5e-41 RING/U-box superfamily protein (.1.2) Lus10043426 [exp] 61 / 3e-10 AT4G40070 84 / 5e-19 RING/U-box superfamily protein (.1) Lus10034157 [exp] 61 / 4e-10 AT4G40070 84 / 7e-19 RING/U-box superfamily protein (.1) Lus10014823 [exp] 62 / 7e-10 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10005816 [exp] 59 / 8e-10 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1) Lus10016936 [exp] 61 / 9e-10 AT1G71980 483 / 1e-169 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10006074 [exp] 60 / 3e-09 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G127100 [exp] 506 / 7e-175 AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2) Potri.003G106600 [exp] 481 / 7e-165 AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2) Potri.018G114700 [exp] 145 / 4e-37 AT5G45290 131 / 2e-32 RING/U-box superfamily protein (.1.2) Potri.006G190500 [exp] 137 / 1e-34 AT5G45290 150 / 3e-39 RING/U-box superfamily protein (.1.2) Potri.014G053500 [exp] 115 / 2e-27 AT5G45290 134 / 4e-34 RING/U-box superfamily protein (.1.2) Potri.002G140500 [exp] 115 / 3e-27 AT5G45290 119 / 1e-28 RING/U-box superfamily protein (.1.2) Potri.012G136400 [exp] 61 / 1e-10 AT5G52140 113 / 1e-30 RING/U-box superfamily protein (.1) Potri.019G091400 [exp] 62 / 2e-10 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.005G111100 [exp] 62 / 2e-10 AT5G66160 264 / 3e-88 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Potri.014G076800 [exp] 59 / 9e-10 AT4G10150 84 / 1e-19 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10035680 pacid=23147442 polypeptide=Lus10035680 locus=Lus10035680.g ID=Lus10035680.BGIv1.0 annot-version=v1.0 ATGGGATCCCGTGGAAGCAAACCTTCCTCCGGCAGCTCTTCTTCTTCGCGGACCGGTGAACAGAAGAAATGTACAAGTAAGGGGAGCAGAGTTTTCCATT CTGGTTGTCTAGGATGGGCTTCTAGGTCCCGCCAATCCTGCACCGATGATCATGTTAGTGAGCATGGGAGTAAAGATGATGAACATGAAGCTTCATCAGC CAATCAAACAGATGAGAGTCGGGTTAAAGTTGAAGGATATGGAAATGCTAAGGTTGATCAGTCTGAGGACATGGCGTGTGCGTCTTCCGAGTCTGATCGG TATGAGTGGAGTCAAGCAAGTATAACGAATACTGCTTCTGGAATTGGCAGCAGCTCCGGCCGTGCTGTTCCCAATCAATCCTTGACATCTCCAAGTAGCA GCTTCCTTTCTCGTTTTAGCTTCATTCCTGGAAATGTGAGTTTCAGGCTTAGCCGAGCAACAAGCTTAGGGTCTTCAAGGGCTTATCCTGTTCCTTCATC AAATTTGAGAATGCAGAATGGTGAAGAAGAGATTTGTGCTGTTATGCCGACTTCTCGGATAGCTAGGACTTTAACGCAGTGCACTGGACGATCCCCTGCG AGATTTAGAACTAATAGTCAAATGTATGGCTCTTTGCAAAATGTGCAAGCCGGCCGTGTAATTCCCTTGGATCAATATAGTACCAGAAACGAGAGTAGGA ATCAGGTATGGGTGGATGGAGACTTGCATTCGCCGAGAGTTCTAAATGATTTGGATAATATTGAGTCCCGAGTTTTCGATAGGCGAACAGCAGCACGAGA ACCAGTTGAACGAAATGTTCGGTTTAGCAGGACTTTGAGCGTTGGACGACTTCGTGATAGAGTTCTTCGTCGATCTTCGTTATCTGATATGTCATTTTGT CCTTTACAACAAGACAGAGAAGTAAGAGATGTTGGTCTAGGAGGTAGGGGGCAGCCGTTGGGTGGTGAGGCTAGAGCAGTAGAAACCGAGCTTGGTGTAC TGCCAGCCTATCCACAGGCACTGTCTTCTGAAGATCTTTCATCAGGCATGCCTAACTCCTTGTTTGGCATTCAGGATCATGAAGTAGAAACATCACGGTC AAGAGAAGCTAGGTATCATGACTTACTTGAACATAGGTCTAATTTCCTCGAAAGAAGGAGACGAATACGGTCTCAGGTCCGTGCTCTTCAGAGGTTAGGA AGCCGTTTTGAGAATTTGTCTGTACATGAGAGGTCTTGTATTTTATCCGGTCAACACAGAGCAGGTCATTGTACTTGTCGCGTAAATAATCGCGATGCCA ATGTAAATGATGACACAAGTGCCAGAGCTAGCATATCAAGAATTGTCATGTTAGCTGAAGCTCTATTTGAGGTTCTGGATGAAATCCATCAGCAATCTGT GGTATTATCTTCTCGGCGTTCTGTGTCTTCACTTGGGTCAGTGCCTGCACCAAACGAAGTTGTGGCATCTCTACCTGTCAAGCTGTACACCAAATTGCAA AAACATCAGAATGATGAGGAAGCACAGTGTTATATATGCCTGGTTGAGTACGAGGAAGGAGAGTGCATCCGTGTACTGCCTTGTCATCATGAATTTCATA GAGCCTGCATCGATAAGTGGCTCACAGAGATTCACAGGTACTGA
AA sequence Show only first row Show all	>Lus10035680 pacid=23147442 polypeptide=Lus10035680 locus=Lus10035680.g ID=Lus10035680.BGIv1.0 annot-version=v1.0 MGSRGSKPSSGSSSSSRTGEQKKCTSKGSRVFHSGCLGWASRSRQSCTDDHVSEHGSKDDEHEASSANQTDESRVKVEGYGNAKVDQSEDMACASSESDR YEWSQASITNTASGIGSSSGRAVPNQSLTSPSSSFLSRFSFIPGNVSFRLSRATSLGSSRAYPVPSSNLRMQNGEEEICAVMPTSRIARTLTQCTGRSPA RFRTNSQMYGSLQNVQAGRVIPLDQYSTRNESRNQVWVDGDLHSPRVLNDLDNIESRVFDRRTAAREPVERNVRFSRTLSVGRLRDRVLRRSSLSDMSFC PLQQDREVRDVGLGGRGQPLGGEARAVETELGVLPAYPQALSSEDLSSGMPNSLFGIQDHEVETSRSREARYHDLLEHRSNFLERRRRIRSQVRALQRLG SRFENLSVHERSCILSGQHRAGHCTCRVNNRDANVNDDTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRRSVSSLGSVPAPNEVVASLPVKLYTKLQ KHQNDEEAQCYICLVEYEEGECIRVLPCHHEFHRACIDKWLTEIHRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45290			RING/U-box superfamily protein...		Lus10035680 [exp]	0	1
AT2G21300			ATP binding microtubule motor ...		Lus10035471 [exp]	3.6	0.9511
AT5G60720			Protein of unknown function, D...		Lus10021450 [exp]	3.7	0.9648
AT3G14170			Plant protein of unknown funct...		Lus10013177 [exp]	4.5	0.9601
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10012523 [exp]	4.9	0.9605
AT2G20650			RING/U-box superfamily protein...		Lus10039848 [exp]	6.3	0.9571
AT5G60720			Protein of unknown function, D...		Lus10016114 [exp]	6.9	0.9606
AT5G55950			Nucleotide/sugar transporter f...		Lus10022563 [exp]	8.1	0.9600
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031264 [exp]	9.5	0.9544
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	10.2	0.9604
AT1G13635			DNA glycosylase superfamily pr...		Lus10019199 [exp]	10.9	0.9581

Compare expression of checked genes

Lus10035680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.