Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11340 189 / 1e-59 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G55700 187 / 1e-58 UDP-Glycosyltransferase superfamily protein (.1) AT5G59590 184 / 2e-57 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT5G59580 182 / 9e-57 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT3G55710 182 / 1e-56 UDP-Glycosyltransferase superfamily protein (.1) AT3G46700 181 / 3e-56 UDP-Glycosyltransferase superfamily protein (.1) AT3G46690 178 / 5e-55 UDP-Glycosyltransferase superfamily protein (.1) AT5G05870 177 / 2e-54 UGT76C1 UDP-glucosyl transferase 76C1 (.1) AT3G46660 175 / 1e-53 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT5G05880 174 / 1e-53 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037268 [exp] 265 / 1e-88 AT3G11340 447 / 1e-154 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004672 [exp] 228 / 1e-73 AT3G11340 417 / 1e-142 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004671 [exp] 213 / 1e-68 AT3G55700 450 / 4e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10040246 [exp] 191 / 4e-60 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10040725 [exp] 169 / 1e-51 AT5G59590 408 / 9e-140 UDP-glucosyl transferase 76E2 (.1) Lus10004673 [exp] 160 / 3e-51 AT3G11340 236 / 1e-76 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016460 [exp] 166 / 3e-50 AT5G59590 400 / 2e-136 UDP-glucosyl transferase 76E2 (.1) Lus10016461 [exp] 162 / 5e-49 AT3G11340 381 / 3e-129 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016459 [exp] 153 / 3e-45 AT5G59590 357 / 3e-119 UDP-glucosyl transferase 76E2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195600 [exp] 198 / 1e-62 AT3G55700 515 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195300 [exp] 191 / 8e-60 AT3G11340 485 / 6e-170 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195500 [exp] 191 / 8e-60 AT3G11340 483 / 3e-169 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.009G039100 [exp] 191 / 1e-57 AT3G09360 412 / 7e-134 Cyclin/Brf1-like TBP-binding protein (.1) Potri.001G245900 [exp] 177 / 1e-54 AT3G46660 452 / 7e-157 UDP-glucosyl transferase 76E12 (.1) Potri.006G039300 [exp] 160 / 6e-48 AT5G59590 347 / 2e-115 UDP-glucosyl transferase 76E2 (.1) Potri.007G095000 [exp] 150 / 3e-44 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.016G021000 [exp] 140 / 2e-40 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G020900 [exp] 140 / 3e-40 AT1G22380 538 / 0.0 UDP-glucosyl transferase 85A3 (.1) Potri.006G022600 [exp] 139 / 5e-40 AT1G22400 515 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10035681 pacid=23147512 polypeptide=Lus10035681 locus=Lus10035681.g ID=Lus10035681.BGIv1.0 annot-version=v1.0 ATGCTAAACAACAATCAAGTACCAAGATCAGTTCTTTACATCAGCTTCGGCAGCATCGCAACCGTAACCGAGGCCGACGCGCTGGAGATCGCTTGGGGGG TCGCCAACAGCCAGCAGCCATTCCTATGGGTGGTTCGACCGAAATCAGTGGAGAAGTCCGAATGGATCGAGTTTTTACCTGAAGAGTTCCACCAGGCGGT GGCCGGAAAAGGACACATTGTGAGATGGGCTCCACAGGCGGAGGTGCTGGCGCATCCGTCGACGGGAGCGTTCTGGACGCACTGCGGATGGAACTCGACG CTGGAGAGCATCTGCCAAGGAGTGCCGATGATCTGTGCGCCGAGCTTTGGCGACCAGTTGGTGAATGCGAGGTACGTGAGCGATGTTTGGAAGGTGGGGA TTCACTAG
AA sequence Show only first row Show all	>Lus10035681 pacid=23147512 polypeptide=Lus10035681 locus=Lus10035681.g ID=Lus10035681.BGIv1.0 annot-version=v1.0 MLNNNQVPRSVLYISFGSIATVTEADALEIAWGVANSQQPFLWVVRPKSVEKSEWIEFLPEEFHQAVAGKGHIVRWAPQAEVLAHPSTGAFWTHCGWNST LESICQGVPMICAPSFGDQLVNARYVSDVWKVGIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10035681 [exp]	0	1
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026097 [exp]	6.8	0.9445
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10032929 [exp]	7.4	0.9477
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023361 [exp]	11.2	0.9316
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10005670 [exp]	12.1	0.9316
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005950 [exp]	13.3	0.9308
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10041651 [exp]	15.5	0.9292
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10009254 [exp]	16.0	0.9440
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10027864 [exp]	16.6	0.9363
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	22.2	0.9249
AT1G72220			RING/U-box superfamily protein...		Lus10015901 [exp]	22.4	0.9248

Compare expression of checked genes

Lus10035681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.