Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19420 528 / 0 Pectinacetylesterase family protein (.1.2) AT4G19410 445 / 1e-155 Pectinacetylesterase family protein (.1.2) AT5G45280 432 / 6e-151 Pectinacetylesterase family protein (.1.2) AT1G57590 395 / 3e-135 Pectinacetylesterase family protein (.1) AT2G46930 388 / 6e-133 Pectinacetylesterase family protein (.1) AT3G62060 386 / 3e-132 Pectinacetylesterase family protein (.1) AT5G26670 383 / 4e-131 Pectinacetylesterase family protein (.1.2) AT3G05910 382 / 2e-130 Pectinacetylesterase family protein (.1.2) AT3G09410 357 / 6e-121 Pectinacetylesterase family protein (.1.3) AT5G23870 355 / 4e-120 Pectinacetylesterase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037269 [exp] 741 / 0 AT4G19420 548 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034767 [exp] 615 / 0 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 610 / 0 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034766 [exp] 540 / 0 AT4G19420 508 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033304 [exp] 467 / 8e-164 AT4G19420 392 / 2e-134 Pectinacetylesterase family protein (.1.2) Lus10033301 [exp] 442 / 1e-154 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10007200 [exp] 382 / 1e-130 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1) Lus10038024 [exp] 380 / 7e-130 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 380 / 1e-129 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G234100 [exp] 570 / 0 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G233900 [exp] 455 / 1e-159 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 437 / 3e-152 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.013G000900 [exp] 398 / 7e-137 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 395 / 7e-136 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.014G110900 [exp] 390 / 3e-133 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.010G004400 [exp] 386 / 5e-132 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.006G084900 [exp] 371 / 3e-126 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.012G142300 [exp] 356 / 9e-121 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.015G145400 [exp] 349 / 4e-118 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03283 [flax] [poplar] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Lus10035682 pacid=23147689 polypeptide=Lus10035682 locus=Lus10035682.g ID=Lus10035682.BGIv1.0 annot-version=v1.0 ATGGGGGAGAGAAGATTATGCGAGTTAGGCAAATGGTCCAGTATCTTTGTGTCTTTTGTTCTGTTTTTCATAAGCACAACTGAAGGCCATTATGCTCCAA TTACGTATGTGACCAGTGGTATTGCAAAAGGAGCTGTTTGCTTGGATGGAAGCCCGCCGGCTTACAACTTTGATGAAGGCTATGGAACTGGGATCAATAA TTGGTTAATTCAACTTGAGGGAGGAGGATGGTGCAACAATGTCACTTCGTGTCTTGCTCGTAAAAACACTCGCTTAGGTTCATCCAAGCAAATGGGAAAC CAGTTAGCCTTTTCTGGAATCATGAGCAATAGGCACGGATTTAATCCAGATTTCTACAACTGGAACAGAGTTAAGATAAGATATTGTGACGGATCATCTT TTACCGGTGACGTAGAAGCAGTAAATCCTGAAACCAAGCTTCACTACAGAGGTGCAAGGGTTTGGCTTGCTGTTATGGAGGATCTTCTAGCTAAAGGGAT GAGAAATGCTGAAAATGCTATTCTGTCAGGATGTTCAGCTGGTGGCCTGGCTTCTATTTTGCATTGTGATAGCTTCAGAGCTCTTCTGCCTATGGGTACT AAAGTGAAATGCCTTTCGGATGCTGGCTATTTCATCAATGTGAAAGATACTGCAGGAGTACCCCACATTGAAGCCTATTTCAACCAAGTGGTTTCTTTAC ATGGATCAGTGAAGAATTTGCCTGCATCGTGTACCAGAAGTACCTCAACACCATCATCATGTTTCTTTCCTCAGAATGTCATTCAACAAGTTCGAACGCC GATTTTCCTTCTCAACGCTGCATATGATTCATGGCAGATAAGGAACATCTTGGCTCCGGCTGATGCCGATCCTCATGGCTCCTGGAACGCCTGCAAGCTC GACATACACAATTGCTCACCTCTAGAGCTAAAAACAATGCAAGCATTCAGGATGGAGTTCTTGAACGCATTGCCCAGATCTGCAGATTCATTAGCAAGGG GAGTATACATAGACTCCTGTTATGCTCATTGCCAAACTGAATTCCAGGAAACCTGGTACATGCCAGTTTCCCCTGCTATTGCTCAAACTAAAATAGCGAC AGCAGTGGGAGAATGGTTTTACGACAGAGCTCCATTCCAAAAGATTGATTGTGCTTACCCATGCAACCCGACTTGTCGTGCACCTGGTGGAAATATTGGC CATGGTGGACTGGTTCCGATTCTTCCAAATGTATAG
AA sequence Show only first row Show all	>Lus10035682 pacid=23147689 polypeptide=Lus10035682 locus=Lus10035682.g ID=Lus10035682.BGIv1.0 annot-version=v1.0 MGERRLCELGKWSSIFVSFVLFFISTTEGHYAPITYVTSGIAKGAVCLDGSPPAYNFDEGYGTGINNWLIQLEGGGWCNNVTSCLARKNTRLGSSKQMGN QLAFSGIMSNRHGFNPDFYNWNRVKIRYCDGSSFTGDVEAVNPETKLHYRGARVWLAVMEDLLAKGMRNAENAILSGCSAGGLASILHCDSFRALLPMGT KVKCLSDAGYFINVKDTAGVPHIEAYFNQVVSLHGSVKNLPASCTRSTSTPSSCFFPQNVIQQVRTPIFLLNAAYDSWQIRNILAPADADPHGSWNACKL DIHNCSPLELKTMQAFRMEFLNALPRSADSLARGVYIDSCYAHCQTEFQETWYMPVSPAIAQTKIATAVGEWFYDRAPFQKIDCAYPCNPTCRAPGGNIG HGGLVPILPNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19420			Pectinacetylesterase family pr...		Lus10035682 [exp]	0	1
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10003269 [exp]	1.0	0.9751
AT4G19420			Pectinacetylesterase family pr...		Lus10037269 [exp]	1.7	0.9546
AT5G22050			Protein kinase superfamily pro...		Lus10004110 [exp]	6.2	0.9355
AT5G05130			DNA/RNA helicase protein (.1)		Lus10027296 [exp]	6.2	0.9553
AT3G21260		GLTP3	GLYCOLIPID TRANSFER PROTEIN 3,...		Lus10029765 [exp]	7.3	0.9318
AT3G17152			Plant invertase/pectin methyle...		Lus10037793 [exp]	7.7	0.9356
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10018084 [exp]	8.8	0.9278
AT4G37410		CYP81F4	"cytochrome P450, family 81, s...		Lus10024083 [exp]	9.5	0.9455
AT1G23030		PUB11	ARM repeat superfamily protein...		Lus10039197 [exp]	9.6	0.9302
AT4G13400			2-oxoglutarate (2OG) and Fe(II...		Lus10033085 [exp]	10.2	0.9518

Compare expression of checked genes

Lus10035682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.