Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31730 1323 / 0 Adaptin family protein (.1) AT1G60070 228 / 1e-62 Adaptor protein complex AP-1, gamma subunit (.1.2) AT1G23900 208 / 1e-55 GAMMA-ADAPTIN 1, GAMMA-AD, GAMMA-ADR, GAMMA-ADAPTIN1 gamma-adaptin 1 (.1.2) AT5G22770 190 / 2e-49 ALPHA-ADR alpha-adaptin (.1.2.3) AT5G22780 189 / 3e-49 Adaptor protein complex AP-2, alpha subunit (.1) AT1G48760 112 / 3e-25 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) AT1G23940 72 / 1e-12 ARM repeat superfamily protein (.1) AT4G31490 57 / 5e-08 Coatomer, beta subunit (.1) AT4G31480 57 / 6e-08 Coatomer, beta subunit (.1.2) AT5G11490 44 / 0.0005 adaptin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037272 [exp] 1744 / 0 AT1G31730 1341 / 0.0 Adaptin family protein (.1) Lus10035684 [exp] 1671 / 0 AT1G31730 1312 / 0.0 Adaptin family protein (.1) Lus10037271 [exp] 1654 / 0 AT1G31730 1278 / 0.0 Adaptin family protein (.1) Lus10012988 [exp] 220 / 9e-60 AT1G60070 1397 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10029177 [exp] 212 / 7e-57 AT1G60070 1389 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10020522 [exp] 197 / 9e-52 AT5G22780 1689 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10019520 [exp] 195 / 5e-51 AT5G22780 1672 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10005371 [exp] 194 / 8e-51 AT5G22780 1679 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10043363 [exp] 190 / 3e-49 AT5G22780 1659 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235200 [exp] 1471 / 0 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.016G104700 [exp] 234 / 2e-64 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.006G092800 [exp] 231 / 2e-63 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.004G189700 [exp] 201 / 6e-53 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.009G150300 [exp] 193 / 2e-50 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.015G045600 [exp] 112 / 6e-25 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.012G055000 [exp] 109 / 4e-24 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.018G007400 [exp] 62 / 1e-09 AT4G31480 1672 / 0.0 Coatomer, beta subunit (.1.2) Potri.006G273300 [exp] 56 / 1e-07 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region
Representative CDS sequence Show only first row Show all	>Lus10035683 pacid=23147600 polypeptide=Lus10035683 locus=Lus10035683.g ID=Lus10035683.BGIv1.0 annot-version=v1.0 ATGGGCTCCCAAGGAGGAATCGGCCAATCGAAGGAGTTCCTTGATCTGGTCAAGTCAATCGGCGAAGCCCGATCGAAGGCTGAGGAGGACCGTATAATCC TCCGGGAAATCGAAACTCTAAAGCGACGCCTCGTCGAGCCTGGAATCCCCAAGCGCAAGATGAAGGAATACATTATGCGGTTGGTGTACGTGGAGATGCT CGGCCACGATGCTTCCTTTGGGTACATTCATGCCGTCAAAATGACACACGACGACCATTTGTTCCTCAAGCGGACGGGTTACTTGGCTGTCACTCTCTTC CTCAATGAAGATCACGATTTGATCATCTTAATTGTCAACACCATTCAGAAGGACTTGAAATCTGACAACTTTCTGATCGTGTGCGCTGCATTGAATGCGG TCTGTAAATTGATCAACGAGGAGACAATACCTGCTGTTTTGCCTCAAGTAGTGGAATTATTGGGCCATCAGAAGGAGGCAGTTAGAAAGAAGGCTATCAT GGCTCTCCATCGCTTCTACCAGAAGTCTCCTTCCTCTGTTTCTCATCTCATTTCCAACTTCCGAAAGAGGCTATGTGATAATGATCCTGGTGTCATGGGT GCAACACTTTGTCCTCTTTTTGATCTTATCAGTAGAGATGTTAGCTCATTTAAGGATTTGGTGGTCAGCTTTGTAAGCATCCTTAAACAAGTAGCTGAAC ATAGGTTGCCGAAGACTTACGATTATCATCAGATGCCAGCTCCATTCGTACAGATTAGGTTGCTGAAAATTCTGTCACTTCTTGGAAGCGGTGATAAACA TGCAAGCGAGCAGATGTACACTGTTGTTGGTGACATATTGAGGAAGTGTGATTCATCAAGCAATATAGGAAATGCTATACTCTATGAATGTGTATGCTGT GTATCTTCAATGCATCCTAGTCCTAAGTTGCTGGAATCTGCGGCAGATGTAATAGCAAGATTTCTAAAGAGTGACAGCCATAATCTGAAGTATTTAGGCA TAGACGCCCTCTGTCGATTGATAAAATTGAGTCCAGAGATAGCAGAACAACACCAGCTGGCTGTGATAGATTGCTTAGAGGACCCAGATGATACCCTAAA GCGAAAAACCTTTGAGCTGCTGCTCAAAATGACGAAGTCATCCAATGTGGAAGTGATTATTGACCGCATGATTGATTACATGATTAGCATAAATGACAAT CATTACAAAACCGATATTGTATCTCGATGTGTTGAACTTGCAGAGCAATTTGCACCAAGCAACCAATGGTTTATTCAGATCATGAACAGAGTCTTTCAAC ATGCTGGAGATCTTGTAAACATTAAGGTCGCCCACAACTTGATGCGCTTAATTGCTGAAGGATTTGGTGAAGATGATGATACTGCAGATACTCACCTTAG ATCATCAGCTGTGGAGTCATATTTACGAATTATAGGAGCACCAAAGCTGCCATCCGTTTTTCTTCAAGTTATTTGCTGGGTATTGGGTGAATTTGGAACC GCTGATGGAAAGTATTCTGCATCATATATTACTGGGAAGTTGTGTGATGTAGCTGAGGCATACTCAGATGATGAACCTGTCAAGGGTTATGCTATGACAG CACTCATGAAGATATATGCCTTTGAGATGGCTGCTGGTAGAAAAGTGGACGTGCTACCGGAGTGTGAAACGTTGATTGAAGAATTGTCAGCTTCCCACTC AAGTGACTTGCAGCAGCGTGCATATGAACTCCAAGCAGTCCTTGCCTTAGATGCCCAAGCTATTGAAAACATCATGCCATCAGACGCAAGCTGTAGAGAG ATTGAGATTGATAAAAGCCTCCCTTTCCTTGATGATTTCGTTGAGCGGGCAATAGAAAAGGGATCTCAACCATACATTCCAGAAAGTGAACGTTCTGGGT TTGCAGGTGTCAGTTACTTAAAGAACCAAGACCTGCAAGAAGTTCCTTCTCATGGTCTTAGGTTTGAGGCCTATGAGCTTCCAAAGCCCTCTGTGCCCCT TGCAAGTCCTCCTGTATCTATTGGAACATCCAATGAACTCATTCCAGTTCCTGAGCCATCGTTTAATTTGGTGAATCATACGCCTGTATCTCTATCATCA TCTGATTCAGGACACACAGCCGTCAAGTTACGACTTGATGGGGTTCAAAAGAAGTGGGGTAGGTCCACTTATTCATCTTCAGTATCCACTACAAGTGCTG CCCCGCAGGATACCGTCAATGGGGTAACACTGCCAGATGCTGCAGCATCCCCATCTGCTGCTGCTATTCCTAAAGGACGAGAAACAACTTACGAACCAAG GAAGCCCCAAGTAGAAATATCTCCAGAAAAGCAAAAGCTTGCAGCATCACTGTTTGGAGGATCATCAAAACAGGAAAGGAAGTCATCCCTATCTGGCCAA AAGACTGTAAAGTCAAGTGGCCATGCAGCAAAGGGATCAGATTCGTCGGAGGCTAAGAAGAAGGCTCCTGTTCAGCCACAACCAGATTTGCTCGACTTAG GTCAAACAAGTAATGCAAGCACAACCCCATCAGTTGACCCTTTCAAACAATTGGAGGGGCTACTTGATGTTGTCGAAGTTAATTCATCGGCAAATCACAG TAATGTCAGTGGCACAAAAGCACCAGATATGATGGGCTTATACGGAAACTCTACTACTACTACTGGTCAGAATGGTGGCCACCATTCCTCAAGTATCGAT GATGTCGATAATCTTATGTCTGGTTTGTCATCTGCAACAGCAGGCACTTCTCAAGCGGGGATTACGACTTCTCAGGCTGCCCCAATTAGTAAAGGTCCGA ACCTAACAGATGCCCTGCAGAAGGATGCACTGGTAAGGCAGATGGGTGTGAACCCGTCGAGCCAAAATCCCAACTTATTTAAAGATCTGTTAGGCTGA
AA sequence Show only first row Show all	>Lus10035683 pacid=23147600 polypeptide=Lus10035683 locus=Lus10035683.g ID=Lus10035683.BGIv1.0 annot-version=v1.0 MGSQGGIGQSKEFLDLVKSIGEARSKAEEDRIILREIETLKRRLVEPGIPKRKMKEYIMRLVYVEMLGHDASFGYIHAVKMTHDDHLFLKRTGYLAVTLF LNEDHDLIILIVNTIQKDLKSDNFLIVCAALNAVCKLINEETIPAVLPQVVELLGHQKEAVRKKAIMALHRFYQKSPSSVSHLISNFRKRLCDNDPGVMG ATLCPLFDLISRDVSSFKDLVVSFVSILKQVAEHRLPKTYDYHQMPAPFVQIRLLKILSLLGSGDKHASEQMYTVVGDILRKCDSSSNIGNAILYECVCC VSSMHPSPKLLESAADVIARFLKSDSHNLKYLGIDALCRLIKLSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLLKMTKSSNVEVIIDRMIDYMISINDN HYKTDIVSRCVELAEQFAPSNQWFIQIMNRVFQHAGDLVNIKVAHNLMRLIAEGFGEDDDTADTHLRSSAVESYLRIIGAPKLPSVFLQVICWVLGEFGT ADGKYSASYITGKLCDVAEAYSDDEPVKGYAMTALMKIYAFEMAAGRKVDVLPECETLIEELSASHSSDLQQRAYELQAVLALDAQAIENIMPSDASCRE IEIDKSLPFLDDFVERAIEKGSQPYIPESERSGFAGVSYLKNQDLQEVPSHGLRFEAYELPKPSVPLASPPVSIGTSNELIPVPEPSFNLVNHTPVSLSS SDSGHTAVKLRLDGVQKKWGRSTYSSSVSTTSAAPQDTVNGVTLPDAAASPSAAAIPKGRETTYEPRKPQVEISPEKQKLAASLFGGSSKQERKSSLSGQ KTVKSSGHAAKGSDSSEAKKKAPVQPQPDLLDLGQTSNASTTPSVDPFKQLEGLLDVVEVNSSANHSNVSGTKAPDMMGLYGNSTTTTGQNGGHHSSSID DVDNLMSGLSSATAGTSQAGITTSQAAPISKGPNLTDALQKDALVRQMGVNPSSQNPNLFKDLLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31730			Adaptin family protein (.1)		Lus10035683 [exp]	0	1
AT1G31730			Adaptin family protein (.1)		Lus10037271 [exp]	1.0	0.9258
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10025509 [exp]	1.4	0.8812
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10012303 [exp]	3.5	0.8746
AT5G65620			Zincin-like metalloproteases f...		Lus10019236 [exp]	3.5	0.8574
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10019021 [exp]	4.5	0.8424
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10010295 [exp]	6.3	0.8492
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Lus10000272 [exp]	6.5	0.8485
AT1G77680			Ribonuclease II/R family prote...		Lus10025614 [exp]	8.1	0.8149
AT1G77680			Ribonuclease II/R family prote...		Lus10014833 [exp]	11.8	0.8160
AT1G20760			Calcium-binding EF hand family...		Lus10016028 [exp]	15.0	0.8439

Compare expression of checked genes

Lus10035683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.