Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31730 1295 / 0 Adaptin family protein (.1) AT1G60070 232 / 5e-64 Adaptor protein complex AP-1, gamma subunit (.1.2) AT1G23900 211 / 1e-56 GAMMA-ADAPTIN 1, GAMMA-AD, GAMMA-ADR, GAMMA-ADAPTIN1 gamma-adaptin 1 (.1.2) AT5G22780 190 / 1e-49 Adaptor protein complex AP-2, alpha subunit (.1) AT5G22770 190 / 1e-49 ALPHA-ADR alpha-adaptin (.1.2.3) AT1G48760 111 / 1e-24 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) AT1G23940 72 / 9e-13 ARM repeat superfamily protein (.1) AT4G31490 55 / 3e-07 Coatomer, beta subunit (.1) AT4G31480 54 / 4e-07 Coatomer, beta subunit (.1.2) AT5G11490 44 / 0.0005 adaptin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037272 [exp] 1795 / 0 AT1G31730 1341 / 0.0 Adaptin family protein (.1) Lus10035683 [exp] 1701 / 0 AT1G31730 1343 / 0.0 Adaptin family protein (.1) Lus10037271 [exp] 1548 / 0 AT1G31730 1278 / 0.0 Adaptin family protein (.1) Lus10012988 [exp] 223 / 1e-60 AT1G60070 1397 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10029177 [exp] 214 / 1e-57 AT1G60070 1389 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Lus10020522 [exp] 198 / 5e-52 AT5G22780 1689 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10019520 [exp] 195 / 5e-51 AT5G22780 1672 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10005371 [exp] 194 / 8e-51 AT5G22780 1679 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10043363 [exp] 190 / 2e-49 AT5G22780 1659 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235200 [exp] 1449 / 0 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.016G104700 [exp] 236 / 4e-65 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.006G092800 [exp] 233 / 3e-64 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.004G189700 [exp] 202 / 2e-53 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.009G150300 [exp] 193 / 2e-50 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.015G045600 [exp] 112 / 4e-25 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.012G055000 [exp] 110 / 3e-24 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.018G007400 [exp] 62 / 2e-09 AT4G31480 1672 / 0.0 Coatomer, beta subunit (.1.2) Potri.006G273300 [exp] 55 / 2e-07 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region
Representative CDS sequence Show only first row Show all	>Lus10035684 pacid=23147543 polypeptide=Lus10035684 locus=Lus10035684.g ID=Lus10035684.BGIv1.0 annot-version=v1.0 ATGGAGCAACTCTTCAAATCCGTCGGGAGGGAGCTCGCCATGGGCTCCCAAGGAGGAATCGGCCAATCGAAGGAGTTCCTTGATCTGGTCAAGTCAATCG GCGAAGCCCGATCGAAGGCTGAGGAGGACCGTATAATCCTCCGGGAAATCGAAACGCTAAAGCGACGCCTCGTCGAGCCTGGAATCCCCAAACGCAAGAT GAAGGAATACATTATGCGGTTGGTGTACGTGGAGATGCTCGGCCACGATGCTTCCTTTGGGTACATTCATGCCGTCAAAATGACACACGACGACCATTTG TTCCTCAAGCGGACGGGTTACTTGGCGGTCACTCTCTTCCTCAATGAAGATCACGATTTGATCATCTTAATTGTCAACACCATTCAGAAGGACTTGAAAT CTGACAACTTTCTGATCGTGTGCGCTGCACTGAATGCGGTTTGTAAATTGATCAACGAGGAGACGATACCTGCTGTTTTGCCTCAAGTAGTGGAATTATT GGGCCATCAGAAGGAGGCTGTTAGAAAGAAGGCTATCATGGCTCTCCATCGCTTCTACCAGAAGTCTCCTTCCTCTGTTTCTCATCTCATTTCCAACTTC CGAAAGAGGCTATGTGATAATGATCCTGGTGTCATGGGTGCAACGCTTTGTCCTCTTTTTGATCTTATCAGTAGAGATGTTAGCTCATTTAAGGATTTGG TGGTCAGCTTTGTAAGCATACTTAAACAAGTAGCTGAGCATAGATTGCCGAAGACTTATGATTACCATCAGATGCCAGCTCCATTTGTACAGATTAGGTT GCTAAAAATTCTGTCACTGCTTGGAAGCGGTGATAAACATGCAAGTGAGCAGATGTACACTGTTGTTGGTGACATATTGAGGAAGTGTGATTCATCAAGC AATATAGGAAATGCTGTACTCTATGAATGTGTATGCTGCGTGACTTCAATGCATCCGAGTCCTAAGTTGTTGGAATCTGCGGCAGATGTAATAGCAAGAT TTTTAAAGAGTGACAGCCATAATCTGAAGTATTTGGGCATAGACGCACTCGGTCGACTGATAAAATTGAGTCCAGAGACAGCAGAACAACACCAGCTGGC TGTGATAGATTGCTTAGAGGACCCAGATGATACCCTAAAGCGAAAAACCTTTGAGCTGCTGCACAAAATGACGAAGTCATCCAATGTGGAAGTGATTGTT GACCGCATGATTGATTACATGATCAGCATAAATGACAATCATTACAAAACCGATATAGTATCTCGTTGTGTTGAACTTGCAGAGCAATTTGCACCAAGCA ACCAATGGTTTATTCAGACCATGAACAGAGTCTTTGAACATGCTGGAGATCTTGTAAACATTAAGGTAGCCCACAACTTGATGCGCTTAATTGCTGAAGG ATTTGGCGAAGATGATGATACTGCAGATACTCACCTTAGATCATCTGCTGTGGAGTCATATTTACGAATTATAGGAGCACCAAAGCTCCCATCCATTTTT CTCCAAGTTATTTGCTGGGTGTTGGGTGAATTTGGGACAGCTGATGGAAAGTATTCTGCATCATATATTACTGGGAAGTTGTGTGATGTAGCTGAGGCAT ACTCTAATGATGAACCTGTCAAGGGTTATGCAGTGACAGCACTCATGAAGATATATGCCTTTCATATGGCTGCTGGTAGAAAAGTGGACGTGCTACCTGA GTGTGAAAGCCTGATTGAAGAAATGTCAGCTTCCCACTCAAGTGACTTGCAGCAGCGTGCATATGAACTCCAAGCAGTCCTTGCCCTAGATGCCCGTGCT ATTGAAAACATCATGCCATCAGACGCAAGCTGCAGAGAGATTGAGATTGATAAAAGCCTCCCTTTCCTTGATGATTTCGTTGAGCGGGCAATAGAAAAGG GATCTCAACCATACATTCCAGAAAGTGAACGTTCTGGGTTTGCAGGTGTCAGTTACTTAAAGAACCAAGACCTGCAAGAAGTTCCTTCTCATGGTCTTAG GTTTGAGGCCTATGAGCTTCCAAAGCCCTCTGTGCCCCTTGCAAGTCCTCCTGTATCTATTGGAACATCCAACGAACTCATTCCAGTTTCCGAGCCATCA TTTAACTTGGTGAATCAGACAACTGTGTCTCTGTCGTCATCTGATGCAGGACCTGGAGGCATCAAGTTACGACTTGATGGGGTTCAAAAGAAGTGGGGTA GGTCAACTTATTCATCTTCAGTGTCCACAACAACAAGTGCTGCCCCGCAGGATACCGTCAATGGGGTAACACTGCCAGATGCTGCAGCCGCCGCGTCTGC TGCTGCTGTTCCATCTCTATCTGGCCAAAAGACTGCAAAGACAAGTAGCCATGCAGCAAAGGGATCAGATTCGTCAGAGACTTCAGCTAAGAAGAAGGCT CCTGTTCAGCCACCACCAGATTTGCTCGACTTAGGCCAAACGAGTAATGTAAGCACAGCCCCATCAGTTGACCCTTTTAAACAATTGGAGGGGCTACTTG ATATTGTCGAAACGGCAAATCACAGTAATGTCAGTGGCACAAAAACACCAGATTTTATGGGCTTATATGGAGACTCTGATACCCCTGGTCCGGATGGTGG CCACCATTTCTCAAGTATCGATGATGTGGATAATCTTATGTCTGGTTTGTCATCTGCAACTTCTCAGACTGCCCAAATTAGTAAAGGTCCGAGTGTAGAA GATGCCATACAGAAGGATGCATTGGTAAGGCAGATGGGTGTGAACCCGTCGAGCCAAAATCCCAACTTATTTAAGGATCTGTTAGGCTGA
AA sequence Show only first row Show all	>Lus10035684 pacid=23147543 polypeptide=Lus10035684 locus=Lus10035684.g ID=Lus10035684.BGIv1.0 annot-version=v1.0 MEQLFKSVGRELAMGSQGGIGQSKEFLDLVKSIGEARSKAEEDRIILREIETLKRRLVEPGIPKRKMKEYIMRLVYVEMLGHDASFGYIHAVKMTHDDHL FLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNFLIVCAALNAVCKLINEETIPAVLPQVVELLGHQKEAVRKKAIMALHRFYQKSPSSVSHLISNF RKRLCDNDPGVMGATLCPLFDLISRDVSSFKDLVVSFVSILKQVAEHRLPKTYDYHQMPAPFVQIRLLKILSLLGSGDKHASEQMYTVVGDILRKCDSSS NIGNAVLYECVCCVTSMHPSPKLLESAADVIARFLKSDSHNLKYLGIDALGRLIKLSPETAEQHQLAVIDCLEDPDDTLKRKTFELLHKMTKSSNVEVIV DRMIDYMISINDNHYKTDIVSRCVELAEQFAPSNQWFIQTMNRVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDTADTHLRSSAVESYLRIIGAPKLPSIF LQVICWVLGEFGTADGKYSASYITGKLCDVAEAYSNDEPVKGYAVTALMKIYAFHMAAGRKVDVLPECESLIEEMSASHSSDLQQRAYELQAVLALDARA IENIMPSDASCREIEIDKSLPFLDDFVERAIEKGSQPYIPESERSGFAGVSYLKNQDLQEVPSHGLRFEAYELPKPSVPLASPPVSIGTSNELIPVSEPS FNLVNQTTVSLSSSDAGPGGIKLRLDGVQKKWGRSTYSSSVSTTTSAAPQDTVNGVTLPDAAAAASAAAVPSLSGQKTAKTSSHAAKGSDSSETSAKKKA PVQPPPDLLDLGQTSNVSTAPSVDPFKQLEGLLDIVETANHSNVSGTKTPDFMGLYGDSDTPGPDGGHHFSSIDDVDNLMSGLSSATSQTAQISKGPSVE DAIQKDALVRQMGVNPSSQNPNLFKDLLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31730			Adaptin family protein (.1)		Lus10035684 [exp]	0	1
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	1.7	0.9650
AT1G31730			Adaptin family protein (.1)		Lus10037272 [exp]	2.0	0.9606
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019751 [exp]	3.0	0.9629
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028092 [exp]	3.7	0.9637
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10027159 [exp]	6.3	0.9469
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040563 [exp]	7.1	0.9569
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10038694 [exp]	7.1	0.9455
AT5G08500			Transmembrane CLPTM1 family pr...		Lus10016422 [exp]	7.4	0.8963
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023393 [exp]	7.7	0.9519
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10040481 [exp]	9.9	0.9456

Compare expression of checked genes

Lus10035684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.