Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45340 662 / 0 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 661 / 0 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT2G29090 507 / 7e-178 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT3G19270 499 / 4e-175 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT1G05160 229 / 1e-69 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 227 / 8e-69 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT1G19630 224 / 9e-68 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT2G42850 222 / 7e-67 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT5G05690 222 / 7e-67 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT5G38970 213 / 1e-63 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034768 [exp] 731 / 0 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10033308 [exp] 728 / 0 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10037273 [exp] 564 / 0 AT4G19230 461 / 2e-161 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10042652 [exp] 474 / 8e-165 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10021725 [exp] 467 / 8e-163 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10019858 [exp] 468 / 5e-162 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10016515 [exp] 459 / 6e-159 AT2G29090 554 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Lus10012675 [exp] 446 / 8e-154 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10040785 [exp] 369 / 3e-116 AT1G07510 1078 / 0.0 FTSH protease 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235400 [exp] 684 / 0 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.001G242600 [exp] 515 / 0 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.014G029100 [exp] 511 / 8e-180 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G140900 [exp] 511 / 1e-179 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G033900 [exp] 503 / 2e-176 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.002G126100 [exp] 501 / 1e-175 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G101700 [exp] 493 / 2e-172 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.002G069600 [exp] 243 / 7e-75 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Potri.008G067500 [exp] 234 / 1e-71 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.007G002400 [exp] 232 / 9e-71 AT5G36110 585 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10035685 pacid=23147631 polypeptide=Lus10035685 locus=Lus10035685.g ID=Lus10035685.BGIv1.0 annot-version=v1.0 ATGGATTCTCCTTCATTAATCCTCCCTTTCTTCTACTTCTTCATCATCGCCGCCGTCTCTTCAATTCTATTCGGGAAGTGGCGCCGCCGCCACCAACTCC CTCTCCCGCCGGGCACCCTGGGCTACCCATACGTCGGAGAGACATTCCAGCTATACTCCCAGGACCCCAACGTCTTCTTCTCCTCCAAAATCAAGAAATT CGGCTCCATTTTCAAGACCCACATCCTCGGTTGCCGCTGCGTCATGATCGCCAGCCCTGAAGCTGCGAAATTCGTTCTGGTTACTAAATCCCACCTCTTC AAGCCCACATTCCCCGCCAGTAAAGAGCGGATGCTTGGACGCCAGGCAATCTTCTTCCACCAAGGAGATTACCATGCCAAGCTACGAAAGCTCGTCCTTC GAGCTTTCCTCCCTCGTTCCCTCCAGCACATCGTCCCTCGCGTCGAATCGCTCGCTCTCCGCTCCATCCGCTCCTGGGAAGCCGCCGAAGAAATCAACAC TTACCTCGAAATGAAAACATACACGTTCAATGTAGCGCTTCTGTCGATATTCGGAAATGACGGGATGATGTACGGAGAGGAGCTGAAGAGGTGTTACTAC GTTCTGGAAAAGGGGTACAATTCGATGCCGGTGAACTTACCGGGGACGCTGTTCCACAAGGCGATGAAGGCGAGGAAGGAGATTGCGACGATTGTAGCGA GAATCATGGCTACAAGGCGGGAAACGAAGATGGAATACAATGACTTGTTGGGTTCTTTCATGGAGGATAAAGAAGGGCTCACCGACGAGCAAATCGCTGA TAACGTCATCGGAGTCATATTCGCAGCTAGGGACACCACCGCCAGTGCTCTCACCTGGGTTCTCAAGTACCTCGGACAGAACCATTCAGTTCTCCAGGCC GTCACTGAAGAGCAAGAGGAAATAGGGAAGGAGATGAGAAACAGAGAGGATGGAGTTTTGAGTTGGGAAGATATGAAAAAGATGCCGATTACATCAAGGG TGATTCAGGAGACGCTCAGAGCTGCTTCGATTCTTTCTTTCACTTTCAGGGAAGCTGTTGAAGATGTTGAATATGAAGGGTATCTGATCCCAAAAGGATG GAAAGTGTTACCCTTGTTCAGGAACATTCACCACAGCCCTGAAATCTTCCCCGACCCTGAGAAATTCGACCCTTCCAGATTCATGGTGGCGCCAAAACCC AATACATTTATGCCATTTGGAAGCGGGACCCACTCATGCCCTGGGAATGAGTTAGCAAAAGTTGAGATATTGGTGCTGCTTCATCACCTGACCACCAAGT ACAGGTGGAGTACGGTTGGTGAGAATGATGGGATTCAATATGGTCCGTTTGCACTTCCCCAGAATGGTCTGCCCATCAAACTATCCCTCAGAAAATAA
AA sequence Show only first row Show all	>Lus10035685 pacid=23147631 polypeptide=Lus10035685 locus=Lus10035685.g ID=Lus10035685.BGIv1.0 annot-version=v1.0 MDSPSLILPFFYFFIIAAVSSILFGKWRRRHQLPLPPGTLGYPYVGETFQLYSQDPNVFFSSKIKKFGSIFKTHILGCRCVMIASPEAAKFVLVTKSHLF KPTFPASKERMLGRQAIFFHQGDYHAKLRKLVLRAFLPRSLQHIVPRVESLALRSIRSWEAAEEINTYLEMKTYTFNVALLSIFGNDGMMYGEELKRCYY VLEKGYNSMPVNLPGTLFHKAMKARKEIATIVARIMATRRETKMEYNDLLGSFMEDKEGLTDEQIADNVIGVIFAARDTTASALTWVLKYLGQNHSVLQA VTEEQEEIGKEMRNREDGVLSWEDMKKMPITSRVIQETLRAASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSPEIFPDPEKFDPSRFMVAPKP NTFMPFGSGTHSCPGNELAKVEILVLLHHLTTKYRWSTVGENDGIQYGPFALPQNGLPIKLSLRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Lus10035685 [exp]	0	1
AT1G21910	AP2_ERF	DREB26	dehydration response element-b...		Lus10028032 [exp]	3.2	0.7905
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Lus10037273 [exp]	3.3	0.8707
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10026498 [exp]	3.6	0.7438
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10036136 [exp]	5.3	0.8537
AT5G11900			Translation initiation factor ...		Lus10013512 [exp]	6.0	0.7617
AT5G66900			Disease resistance protein (CC...		Lus10022464 [exp]	9.9	0.7638
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10000445 [exp]	13.6	0.7953
AT1G65090			unknown protein		Lus10009554 [exp]	14.1	0.7304
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Lus10030226 [exp]	14.2	0.6733
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10026344 [exp]	17.9	0.7211

Compare expression of checked genes

Lus10035685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.