Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17616 155 / 9e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G03100 80 / 2e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037275 [exp] 348 / 1e-115 AT4G17616 560 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007353 [exp] 74 / 3e-14 AT1G03100 1003 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020775 [exp] 60 / 7e-10 AT1G03100 961 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G084400 [exp] 187 / 4e-54 AT4G17616 676 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G212400 [exp] 89 / 1e-19 AT1G03100 1044 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G095800 [exp] 43 / 0.0002 AT1G69290 860 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035686 pacid=23147426 polypeptide=Lus10035686 locus=Lus10035686.g ID=Lus10035686.BGIv1.0 annot-version=v1.0 ATGAAGCCTTATTGGACTTCACTGTCGTTCCTCCACCACCGGCGACAAGTTCTTGTCCTCCTCCTCCATCCTGAAGTTGACATCGCCGCCCCTGACAGCC TGTTTCTATTCAGAGGCAAATTGACAGTCCTCCAACATCGTCGTTTACCGACGAAGAGCTCCACAGGATGCAAAGAATTCTCAGCCGTCGTCGGCGATAT TGATTTGGAGCGTAAGAAGTCGTTTCCTCTTCCTCATTTGGAGGTCCGTCCAGTTTCATTTCACAATCGAAATATTGCCACTGAGAAAACTCTTGGGAAG TTTCATATGATAGACACATGTGTTACGCAATTTCGGCTTTTGGCGTACCAATCTTATTCTAGGACTACTCAACATGCAAAGCTACCTTGGGAGGCTTCCT CCCGTTCTGCTCTCCTGAGAAAGCTTGAGAGTGCTCTAAACAACCATGAAATTGCTGAAGCATGGGTGAATTTCAATAGCTTTAAAGGCTTATATGGATT TCCTCCACATGAACTATTGAACAGGTTGGTCATGGAATTATCATACTCTGCCGACTCTCGTTGGCTACAAATAGCATACAAGTTAGTGATCCTCATTCGG GAAGAGAGCCCTAATCTGCTGCAGACTGATGTACTTGCCAAGCTTTCACTCTCATTAGCAAGAGCACGGATGCCGATTCCAACTTCTGTGATTCTTAGAG TGATGCTGGACGGAAGGATTATGCCTACTGTAGATGTGTTGCAGTTGGTTTTTCTCCACATGGTGAAAACAGAAATTGGGACTAACCTTGCTTCCAATTT CTTGATTCAAATTTGTGAGTGTTTCCTTGATTCAACTGCAAAGAAGGGTCCAATGAAACTGCTGAAACCAGATACCATGACTTTCAATATTATTCTTGAT GGATGCGGAAGGTTTTAA
AA sequence Show only first row Show all	>Lus10035686 pacid=23147426 polypeptide=Lus10035686 locus=Lus10035686.g ID=Lus10035686.BGIv1.0 annot-version=v1.0 MKPYWTSLSFLHHRRQVLVLLLHPEVDIAAPDSLFLFRGKLTVLQHRRLPTKSSTGCKEFSAVVGDIDLERKKSFPLPHLEVRPVSFHNRNIATEKTLGK FHMIDTCVTQFRLLAYQSYSRTTQHAKLPWEASSRSALLRKLESALNNHEIAEAWVNFNSFKGLYGFPPHELLNRLVMELSYSADSRWLQIAYKLVILIR EESPNLLQTDVLAKLSLSLARARMPIPTSVILRVMLDGRIMPTVDVLQLVFLHMVKTEIGTNLASNFLIQICECFLDSTAKKGPMKLLKPDTMTFNIILD GCGRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17616			Pentatricopeptide repeat (PPR)...		Lus10035686 [exp]	0	1
AT1G12390			Cornichon family protein (.1)		Lus10000384 [exp]	2.2	0.8527
AT4G14305			Peroxisomal membrane 22 kDa (M...		Lus10011798 [exp]	16.3	0.8617
AT4G04190			unknown protein		Lus10020577 [exp]	18.7	0.8182
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10017255 [exp]	19.1	0.8348
AT3G51980			ARM repeat superfamily protein...		Lus10023269 [exp]	20.3	0.8693
AT3G56510			RNA-binding (RRM/RBD/RNP motif...		Lus10014585 [exp]	26.3	0.8174
AT2G35035		URED	urease accessory protein D (.1...		Lus10030170 [exp]	34.3	0.8450
AT1G54650			Methyltransferase family prote...		Lus10005515 [exp]	42.5	0.8391
AT4G31460			Ribosomal L28 family (.1)		Lus10013249 [exp]	47.1	0.8354
AT1G49180			protein kinase family protein ...		Lus10033518 [exp]	56.6	0.8365

Compare expression of checked genes

Lus10035686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.