Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28040 828 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G56370 533 / 7e-174 Leucine-rich repeat protein kinase family protein (.1) AT5G01890 527 / 1e-171 Leucine-rich receptor-like protein kinase family protein (.1) AT1G12460 355 / 9e-108 Leucine-rich repeat protein kinase family protein (.1) AT3G51740 265 / 2e-75 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT1G75640 247 / 8e-68 Leucine-rich receptor-like protein kinase family protein (.1) AT1G62950 229 / 1e-62 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G78530 183 / 6e-51 Protein kinase superfamily protein (.1) AT5G62710 184 / 5e-49 Leucine-rich repeat protein kinase family protein (.1) AT4G28650 187 / 2e-48 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037276 [exp] 1507 / 0 AT3G28040 1013 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10012877 [exp] 561 / 0 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030526 [exp] 557 / 0 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022738 [exp] 522 / 8e-170 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10014174 [exp] 518 / 3e-168 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025223 [exp] 511 / 6e-166 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025139 [exp] 504 / 3e-163 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10006675 [exp] 360 / 3e-109 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007020 [exp] 225 / 1e-65 AT1G12460 435 / 2e-146 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147300 [exp] 942 / 0 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G233600 [exp] 919 / 0 AT3G28040 1116 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.016G137000 [exp] 558 / 0 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G091000 [exp] 549 / 3e-180 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 545 / 2e-178 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G058600 [exp] 533 / 3e-174 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G117500 [exp] 358 / 1e-108 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G114500 [exp] 350 / 2e-105 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G126300 [exp] 244 / 5e-68 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.007G014700 [exp] 239 / 4e-65 AT4G36180 1298 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035687 pacid=23147686 polypeptide=Lus10035687 locus=Lus10035687.g ID=Lus10035687.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCAAACAATCCACTGCTCATCATCTCATTTTCAACCTTTCTCATCATTCTGTTCAATCCCACCCCCACCATAGCCGTTGCTGTCAGCGACG ATGCTATCCCCTTCCTGGACGAAGTATTCGGGCTCATTGCATTCAAGTCCGACCTTACCGACCCTGACTCCCATCTCTCCACCTGGAACCAAGACGACGA CTCACCTTGCTCCTGGCGATTCGTCACTTGCAACCCTTCCACCCGCCGCGTCTCCTCCCTCTCCCTCGACGCCTTATCCTTGTCCGGCAAGCTTGGTCGC GGCCTCCACAAATTGAATCACTTGAACTCACTCTCCCTCTCCCGCAACAACATTTCAGGTTCCATCCCTTATTCTCTTCTTGACACCCCTTCTCTTCAAC ATCTTAACCTCAGTCACAACTCTCTTTCCGGCCACATTCCTTCTTCTTTTGTAAACACCAATTCACTTAAATTCATGGATCTCTCCCACAATTCTTTGTC CGGCTCTCTCCCTGACGAACTTTTCATCAACTCTTCTTCGCTCCGCTTGCTGTCTTTGTCTGAAAATTTGCTTTACGGTCCTATTCCGGTTTCTCTGTAC AGATGCTCTCTTCTAAATACCTTGATTCTTTCTGGCAACCTATTGTCCGGCTCCCCGGATTTCTCATCCGGTATTTGGTCGCTCTCTCGGCTTCGCAATC TCGACCTTTCACACAATTCGTTCACTGGGTCCGTGCCGAAAGGAGCGTTCAGGCTACCTTACTTGAAAGAGCTACGATTACATGGCAACGGTTTTGCAGG GGGGATACCTTGGGATATTGGCCTCTGCTCTCACTTGAATTTGCTTGATTTGAGCCACAATGGTTTTACCGGTTCCATTCCTACTTATCTCGAGAGGCTC ACTTCTCTTTCCCACCTCAGCTTGTCCAACAACCAGCTAATTGGGGATCTACCTTCCTGGTTTAGCAAGCTCAGCAATTTGAAATTCCTCGACTTGGGCA ACAATGATTTAACTGGCGGCATTCCCAAATCAATCGTGTCCTGCACTGGGCTAACCGTGATTCGGCTACGAAAGAACAACTTCAACGGCACCATTCCTGA CTATTTGTTCATTGCTCTTGGCAGCCTTGAGGAAGTGGATTTGTCCCACAATCAACTAGTTGGAACAGTGCCGCCATTTTCCCCTGCATTCTTCAAGTCC ATTCACACGATGGATCTTTCCAGTAATCGTCTCACTGGCAACATTCCTTCCGGAACCGGACTAAGCTCCTCCAGCTTGAGGGAGTTGAACTTGTCCATGA ACAACCTGCAAACAAGGCTACCTCCTGAGCTTGGTTATGTACAAAACCTCACAGTTCTCGACTTAAGATATAGTTCTGTTCATGGCTCCATCCCTTCCGA TTTATGCGAATCAGGAAGGCTAACTATTCTTCAATTAGACGGGAATTCTCTAACCGGTCCTATCCCTGAAGAAATCGGCAATTGTTCATCTCTCTACTTG CTGAGCCTATCCCGCAACAATTTGAGTGGCGCAATCCCAGAGTCCATCTCCAAGCTAAGCAAGCTCAAATTCTTGCGTTTGGAATTCAATTCGCTGAGCG GAGGGTTGCCAAACAAGTTAGGAGCACTGAACAATCTTCTGGCAGTGAACATTTCTCACAACAAGCTCATCGGCAGGCTCCCACAAGGCGGAATTTTCCA AAACTTAGACGCGAGCGCACTGCAAGACAACTTAGGGATCTGTTCCCCGCTACTGAAAGGACCTTGCACGATGGCTGCTGCTAAGCCGCTAGTCATCAAT CCCTTCGGCTATCTACCCTTCGGGATTAACCCGCCACACAACTCAAACTCACCAGCCTCACACGCTCACCGCACGTTCCTCACTGTGTCGGCCATCGTAG CAATCAGCGCAGCCGTTTTCATCATCATCGGAGTAGTCATCATCACCTTGCTCAACGTATCCGCCAGGAAGAGGCTCGCGTTTGTTGAGCACGCGCTTGA GAGCATGTGCTCCAGCTCTGTTTCCAGATCGTCAGGCAACCTTTCGGCCAGCAACACAGGCAGGCTTGTTCTGTTCGATTCTAAGTCATCGTCGTCGTTA ACGAAATCTCTCCGTCAACATTTGACCGGCGACAACGTCAATCCGGAATCGCTACTGAGCAAAGGGGCAGAAGAGATCGGAGAAGGCGATTTAGGAACGG TTTACAAAATCGTGATCGGCTCGGAAGGAAGAGCAGTAGTCGCCGTTAAGAAGCTAGACGCATCAAAGATCATTCAACAAGTTGATGATTTCGACAGAGA AGTGAGATTGCTGGGGAAGGTAAAGCACCACAATCTGTTGTCCCTGCAAGGATATTACTGGACGCCGCAACTGCAGCTTCTGGTGACGGAGTACGCTCCC AACGGAAGCTTGCAAGCTAAGCTCCAGGACGAGCCGGCGCTGACATGGGCTGAGAGGTTCAAGATCCTGATGGGGATAGCCTATGGGCTGGCCCATCTAC ATCACACGTTTCCCCCCGCGATAATCCACTACAACGTCAGGCCCAGCAATGTGCTGCTGGACGCGGATCTGAATCCGAAACTGTCGGACTTCGGGCTGAC GAAGCTGCTGACGAAGCAGGAGAGGCACGTGGCCGGAGGAGGAAGGTTTGGGAGGTCGTTTGGGTACGTGGCGCCGGAGGTGGCTTGTAAGAGCCTGAGG GTAAACGAGAAGTGTGACGTGTACGGGTTTGGGGTGGTGGCGCTGGAAGTGGTGACAGGGCGGCGGCCGGTGGAGTACGGAGATGAGAGCGTGGTGATAT TGAGCGATCATGTGAAGGCGATGTTGGAGGAAGGGAATGTGTTGGAGTGCGTGGACTCGAGGATGGAGATGGGTAGTTGGCCGGAGGAAGAAGTGATGCC GGTGTTGAAGCTTGCTCTGGTTTGTACGTCTCAGGTTCCTTCCACCCGTCCTTCCATGGCGGAAGTTGTGCAGATCTTACAAGTCATTAAAACTCCTGTT CCAAGCTAG
AA sequence Show only first row Show all	>Lus10035687 pacid=23147686 polypeptide=Lus10035687 locus=Lus10035687.g ID=Lus10035687.BGIv1.0 annot-version=v1.0 MAPPNNPLLIISFSTFLIILFNPTPTIAVAVSDDAIPFLDEVFGLIAFKSDLTDPDSHLSTWNQDDDSPCSWRFVTCNPSTRRVSSLSLDALSLSGKLGR GLHKLNHLNSLSLSRNNISGSIPYSLLDTPSLQHLNLSHNSLSGHIPSSFVNTNSLKFMDLSHNSLSGSLPDELFINSSSLRLLSLSENLLYGPIPVSLY RCSLLNTLILSGNLLSGSPDFSSGIWSLSRLRNLDLSHNSFTGSVPKGAFRLPYLKELRLHGNGFAGGIPWDIGLCSHLNLLDLSHNGFTGSIPTYLERL TSLSHLSLSNNQLIGDLPSWFSKLSNLKFLDLGNNDLTGGIPKSIVSCTGLTVIRLRKNNFNGTIPDYLFIALGSLEEVDLSHNQLVGTVPPFSPAFFKS IHTMDLSSNRLTGNIPSGTGLSSSSLRELNLSMNNLQTRLPPELGYVQNLTVLDLRYSSVHGSIPSDLCESGRLTILQLDGNSLTGPIPEEIGNCSSLYL LSLSRNNLSGAIPESISKLSKLKFLRLEFNSLSGGLPNKLGALNNLLAVNISHNKLIGRLPQGGIFQNLDASALQDNLGICSPLLKGPCTMAAAKPLVIN PFGYLPFGINPPHNSNSPASHAHRTFLTVSAIVAISAAVFIIIGVVIITLLNVSARKRLAFVEHALESMCSSSVSRSSGNLSASNTGRLVLFDSKSSSSL TKSLRQHLTGDNVNPESLLSKGAEEIGEGDLGTVYKIVIGSEGRAVVAVKKLDASKIIQQVDDFDREVRLLGKVKHHNLLSLQGYYWTPQLQLLVTEYAP NGSLQAKLQDEPALTWAERFKILMGIAYGLAHLHHTFPPAIIHYNVRPSNVLLDADLNPKLSDFGLTKLLTKQERHVAGGGRFGRSFGYVAPEVACKSLR VNEKCDVYGFGVVALEVVTGRRPVEYGDESVVILSDHVKAMLEEGNVLECVDSRMEMGSWPEEEVMPVLKLALVCTSQVPSTRPSMAEVVQILQVIKTPV PS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28040			Leucine-rich receptor-like pro...		Lus10035687 [exp]	0	1
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	1.0	0.9591
AT4G23820			Pectin lyase-like superfamily ...		Lus10003890 [exp]	2.0	0.9568
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	5.7	0.9511
AT1G10850			Leucine-rich repeat protein ki...		Lus10029075 [exp]	6.3	0.9191
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031315 [exp]	6.7	0.9466
AT4G34810			SAUR-like auxin-responsive pro...		Lus10026294 [exp]	7.5	0.9239
AT1G45688			unknown protein		Lus10029743 [exp]	7.7	0.9489
AT5G26230		MAKR1	membrane-associated kinase reg...		Lus10021928 [exp]	8.1	0.9276
AT5G07720			Galactosyl transferase GMA12/M...		Lus10015721 [exp]	8.5	0.9147
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	8.8	0.9443

Compare expression of checked genes

Lus10035687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.